Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01908 ATGGCTCAAAGGGTGCAGATTCTGAAGGACTCAGCATGTCACAGAGGGAACTCAGAGATGAGGATGCAAGCTGTGAAGGATGTGTATGAGGATTGGAGGAGGCACAAGAGTGATAGAGTTGAGAACAACAGGTTGGCGTCGGTTTTGGTTGATGGGAAGTTTGAGGAGAAGAAGTGGAGGGATGTTAGAGTTGGTGAGGTGATAAGGATCAAGGCAAATGAACCCATCCCTTGTGATATTGTGTTGCTCTCAACTAGTGATCCAACTGGGGTTGCATATGTGCAGACTATTAATCTTGATGGGGAGTCAAATTTGAAGACTAGGTATGCAAAACAAGAGACACATGGCAAGGAGGGGTTTGGTGGGGTGATCAAGTGTGAGAAGCCTAATAGGAACATATATGGATTTCTGGCTAACATGGAGGTTGATGGCAAGAAGTTGTCACTTGGATCATCCAACATTGTGCTTAGAGGATGTGAGCTCAAGAATACTAGTTTGGCAATTGGGGTTGCTGTGTATTGTGGGAGTGAGACCAAGGCCATGCTGAATAGCTCCGGAGCTCCTTCTAAGAGGAGCAGGTTGGAGACACGCATGAATTTTGAGATCATTTGGCTCTCTTTCTTCCTTGTGGCATTGTGTACTGTCACCTCAGTTTGTGCTGCTGTGTGGTTGAAGCGCCACAAGGATGAGTTGAATCTGTTGCCTTATTATAGGAAACTGGACTTTTCAGAAGAGGGGGAGGTGGAAAACTATAAGTACTATGGATGGGGGTTGGAAATTTTATTCACATTCCTCATGTCAGTTATAGTATTCCAGGTCATGATTCCCATTTCATTGTACATTTCCATGGAGCTTGTTAGGGTTGGTCAGGCCTACTTCATGATCCGGGACAACAGAATGTATGATGAGGAAACCAAGTCAAGGTTCCAGTGCAGGGCTTTGAACATTAATGAAGATTTGGGGCAGATTAAGTACGTTTTCTCAGACAAAACTGGCACACTCACTCAGAACAAGATGGAGTTTCAATGTGCAAGCATCTGGGGGGTTGATTACAATTCTACAAAAGACAACATGGAGGGTGAGCAAGTTGAACATTCTGTGGAAGTGGATGGAAAGGTCATCAGACCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCAGCTATCAAGAAGTGGACTTCAAAATGTGGAGGGAAAACGGATTCATGATTTCTTTCTAGCACTGGCAACCTGCAACACTATTGTGCCTCTTCTTGTTGACACACCGGACCCTGATGTCAAGCTGATAGATTACCAGGGAGAATCACCGGATGAACAAGCATTGGCTTATGCTGCTGCTGCCTATGGTTTTATGCTCATAGAGCGAACTTCGGGCCATATAATCCTTGATATTCATGGGGAAAGACAGAAGTTCAATGTCTTGGGTTTGCATGAATTTGACAGTGACAGGAAGAGGATGTCGGTTATATTGGGGTACCCTGACAGTTCTGTGAAAGTTTTTGTCAAAGGAGCAGACACATCCATGCTTAATGTGATAGACAAGTCATTTAACATGGACTTAGTAAGAGCCACCGAGGCACATCTTCACTCTTACTCTTCCATGGGTTTGAGGACACTTGTTATTGGCACGAGAGACTTGAATGCTTCAGAATTTGAGAAGTGGCATTCAGCCTTTGAGGCAGCAAGCACTGCTGTGTTTGGCAGGGCTGCGCTGCTCCGCAGGGTTTCTAGCATTGTAGAGAGCAGTCTCAGCGTATTGGGAGCATCAGCCATTGAAGATAAACTGCAACAAGGTGTGCCTGAATCCATTGAGTCTCTAAGGATTGCAGGCATTAAAGTGTGGGTTCTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGCTACTCTTCAAAGCTCCTAACAAGCAGAATGACTCAAATTATAATCAATAGCAAAACCAGAGAATCATGTAGAAAAAGTTTGGAAGATGCCCTTGTCATGTCTAAAAAGCTCCTGTCCTCATCTGGGGTTGCCAACGATGCTGGAGGAAGTTCAGATGCAACTCCAGTAGCTTTGATCATTGATGGTACCAGTCTCGTGCATATTCTTGACAGTGAACTCGAAGAACAGCTATTTCAACTTGCAAGTAGATGCTCTGTTGTTCTATGTTGCCGTGTTGCTCCACTTCAAAAGGCTGGGATAGTTGCCCTTGTGAAGAATAGGACATCTGACATGACACTAGCCATTGGAGATGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGACAAGAGGGTCGGCAAGCTGTAATGGCATCTGATTTTGCAATGGGGCAGTTTAGGTTTTTGGTTCCTCTCTTATTGATACATGGACACTGGAATTATCAACGGCTTGGTTACATGATACTATACAACTTCTACAGAAATGCTGTCCTTGTTCTAGTCCTATTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACCGCCATAAATGAATGGAGCACGACGTTATATTCAATAATCTACAGTTCATTGCCAACTATAATTGTTGGTATTCTAGACAAGGATCTTGGTAGAAGGACTTTGCTAAAGTATCCTCAACTTTATGGGGCAGGACAGAGACATGAGGCCTACAACAAGAAATTGTTTGTGTGGACAATGTTAGATACTTTGTGGCAAAGCTTGGTTATCTTCTGGGCTCCCCTCTTTGCATATTGGAGTAGCACAGTTGATGTGGCAAGCATTGGAGACCTTTGGACTTTTGGAGTTGTTATTTTGGTTAATTTACACTTGGCCATGGATGTCATAAGGTGGTATTGGCTGACCCATGTTGTCATTTGGGGTTCTATTGTTGCAACTTTCATTAGTGTCATGATCATTGATGCTATCCCCAATCTTCCTGGCTACTGGGCCTTCTTTCATGTTGCAGGAACTGGATTGTTCTGGTTATTGTTGCTTGGAATCGTGATAGCTGCATTGCTTCCTCGTTTGGTTGTAAAGTTTGTCTATCAGTATTATTTTCCTAATGATATTCAGATTTGCAGAGAAGCCGAGAAGATTGGATATGAGAGAGTAGTTGAAAGTGGACAGATAGAGATGCTTCCTATCTCAGACAATCCACCAAGATAA 3138 0.4356 MAQRVQILKDSACHRGNSEMRMQAVKDVYEDWRRHKSDRVENNRLASVLVDGKFEEKKWRDVRVGEVIRIKANEPIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHGKEGFGGVIKCEKPNRNIYGFLANMEVDGKKLSLGSSNIVLRGCELKNTSLAIGVAVYCGSETKAMLNSSGAPSKRSRLETRMNFEIIWLSFFLVALCTVTSVCAAVWLKRHKDELNLLPYYRKLDFSEEGEVENYKYYGWGLEILFTFLMSVIVFQVMIPISLYISMELVRVGQAYFMIRDNRMYDEETKSRFQCRALNINEDLGQIKYVFSDKTGTLTQNKMEFQCASIWGVDYNSTKDNMEGEQVEHSVEVDGKVIRPKMKVKVNPELLQLSRSGLQNVEGKRIHDFFLALATCNTIVPLLVDTPDPDVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIILDIHGERQKFNVLGLHEFDSDRKRMSVILGYPDSSVKVFVKGADTSMLNVIDKSFNMDLVRATEAHLHSYSSMGLRTLVIGTRDLNASEFEKWHSAFEAASTAVFGRAALLRRVSSIVESSLSVLGASAIEDKLQQGVPESIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTSRMTQIIINSKTRESCRKSLEDALVMSKKLLSSSGVANDAGGSSDATPVALIIDGTSLVHILDSELEEQLFQLASRCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLFTAFTLTTAINEWSTTLYSIIYSSLPTIIVGILDKDLGRRTLLKYPQLYGAGQRHEAYNKKLFVWTMLDTLWQSLVIFWAPLFAYWSSTVDVASIGDLWTFGVVILVNLHLAMDVIRWYWLTHVVIWGSIVATFISVMIIDAIPNLPGYWAFFHVAGTGLFWLLLLGIVIAALLPRLVVKFVYQYYFPNDIQICREAEKIGYERVVESGQIEMLPISDNPPR 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01908 1045 Gene3D - 324 336 IPR023214 -
Cca10g01908 1045 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 23 1045 - -
Cca10g01908 1045 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 259 348 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca10g01908 1045 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 715 830 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca10g01908 1045 SFLD C1.7: P-type atpase like 311 795 - -
Cca10g01908 1045 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 23 1045 - -
Cca10g01908 1045 Gene3D - 432 563 IPR023299 GO:0000166
Cca10g01908 1045 SUPERFAMILY Calcium ATPase, transduction domain A 43 180 IPR008250 -
Cca10g01908 1045 CDD P-type_ATPase_APLT_Dnf-like 24 904 - -
Cca10g01908 1045 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Cca10g01908 1045 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Cca10g01908 1045 Gene3D - 6 183 - -
Cca10g01908 1045 Gene3D - 583 784 IPR023214 -
Cca10g01908 1045 SFLD p-type atpase 311 795 IPR044492 -
Cca10g01908 1045 Pfam E1-E2 ATPase 46 284 - -
Cca10g01908 1045 Pfam Cation transport ATPase (P-type) 430 510 - -
Cca10g01908 1045 ProSitePatterns E1-E2 ATPases phosphorylation site. 329 335 IPR018303 -
Cca10g01908 1045 Gene3D - 306 323 - -
Cca10g01908 1045 SUPERFAMILY Calcium ATPase, transmembrane domain M 24 1011 IPR023298 -
Cca10g01908 1045 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 23 1019 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca10g01908 1045 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 333 597 IPR023299 GO:0000166
Cca10g01908 1045 Pfam Phospholipid-translocating P-type ATPase C-terminal 772 1012 IPR032630 -
Cca10g01908 1045 SUPERFAMILY HAD-like 322 799 IPR036412 -
Cca10g01908 1045 Gene3D - 337 352 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01908 Cca-Chr10 36362394 36368415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01908 22 1045 Primary Pumps ATPases AT5G04930 68.482 0.0 1496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01908 K14802 - gmx:100813982 1841.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01908 10 36362394 36368415 Cca10g01908 10 36362394 36368415 ECH