Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01904 ATGGGAAGAAGACGAAACGGCCAAGAAACCCTCCGTCGTCGAGTGGAGTCCCTCTACCCTTCCTCCGACCAAACCACGCACCGTACTACCGACCAAATTGTTCAACGTCTTCGTTCAACCTACCCTGATTACCGCCGAATCAAGCACCATGCTCTATTTCGATTGGTCCACGAAGCTCTTCTACCCTCACACGGTAACGACGACGAGCAACTTCTTCAACCCTCACGGAAGAGGCGCAGCACCTCTTCCGAGAGTGACGCCGACAACGGCACTCCATCGGAGCTTTCGTTCGACCTTACCAAGACAATGCTGCGGAATACGTATTTGGGGATGCAGGAAAAGAATGTTGGCTCTGTGAATGAAACTGAAACCACGTTGAAGTCGTCCAGGAAGCGATTGAAGGGTGATGGTGATGATGAGAAGGTGAAGGGGATAGGGTTTAGCGATTTGGGTGGGATTAAGAAGATTAGGAAGGAACTTGATGTGTTGCTGTTGCCGTTTTACCAGCCCCAGGTGGCTAGAGATTTGGGAATGAGTCCCACATCGGGCATTTTGTTGCATGGACCTCCTGGCTGTGGAAAGACTAGACTGGCTCATGCTATAGCTCATCAAACTGGATTCCCTTTTTATCAAATTTCACCTGCCCAAGTGGTGTCTGGAATCTCAGGTGAATCTGAACAGAATATTAGAGATATTTTCTCTAAAGCACACAGGACTGCCCCATCAATTATATTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGGATTTATCGCGCGAGATGGAGAAACGAATTGTCACCCAGTTGTTGACATCCATGGATCAACCGGATAATAACAGCAATGTTCTTGTTATTGGAGCTACTAATAGGCCCAATGTCATTGACTCTGCCCTTAGGAGACCTGGAAGATTTGATCGTGAGATTTATATTGGCATGCCTGATGAATCTGCCAGGGAGGAGATCCTTTCCGTTCTTACTCGCAATGTTAAACTTCAGGGTCCCATTGATCTATTAAAGATAGCTAAATCTACATCAGCATTTGTTGCTTCTGATTTGAAGAGTGTGATCAGTCATGCTGGTTCATTGGCCATGAAGAGAATAATTTATGAAAGGTATACCACAGCAGAGCCTCCAGAGGACTGTTTTAGTGAACCTTGGTCGCCAGAAGAAGTGGACAAGGCTGCCATCACAATGTCTGATTTGGAGGAAGCAGTCAAAATGGTGCAATCTTCAGAAAGAAGAGAAGGGTTCAATCCCATTCCTGATGTAAAATGGGAAGATGTTGGTGGGCTTGATCTCTTAAGAAACGAGTTTGATGACTATATCATAGGGCCTATAAAATGTCCAGGTGATTATGAGGGATTTGGGCTAGATCTTTCGACAGGATTTTTGCTTTATGGACCTCCAGGTTGTGATAAACCACTGGTTGCCAAAGCTGTTGCCAATGCTGCAGGAGTTAGTTTCCGTCATATTAAGGGACCTGATATTCTAAATGAATATGTTGGAGTAAGTGAGAATAATGTTCGGAAAATCTTTGATGCAGCAAGGACATGTGCACCTTGCATACTATTTTTTGATGAGTTGGATGCGTTGACAACCACACGTGGAAAAGGTAAAGAAGGTGCATCAGTCACTGATCGAGTATTGAACCAGTTGCTCATTGAGTTAGATGGTGCAGAGCATCGGAAAAATGTTTTTGTGATTGGAGCAACAAATAGGCCTGAGGTAATTGATCCTGCTCTTTTACGGCCTGGCAGGCTTGGTAGACTTGTTTACGTTCCTCTCCCAAGTCCAGACCAGCGAGTTTTAATATTAAAAACTCTTGCAAGAAAGTATCCTATTGATGACAGTACAGATTTGAGTGCCATAGGAAGATCGGAGGCTTGTGAAAATATGAGTGGTGCTGATCTTGCTTTATTGATGGAAGAAGCAGTAATGACAGTTGTTAGAAAGAATAGGACCTCAAACCATGGCAAGGAGATGACCATCAAGCCATGGCATATAGAAGAAGCACTGACTAGAGTCTTTCCCTCTGTGTCTGACAAGCAAAAGCAGTACTACCAGCGTTTGTCAGAGAGGTTTAGCCCTTCCTTCCACAGAAATGTAAGGGAATGA 2121 0.4446 MGRRRNGQETLRRRVESLYPSSDQTTHRTTDQIVQRLRSTYPDYRRIKHHALFRLVHEALLPSHGNDDEQLLQPSRKRRSTSSESDADNGTPSELSFDLTKTMLRNTYLGMQEKNVGSVNETETTLKSSRKRLKGDGDDEKVKGIGFSDLGGIKKIRKELDVLLLPFYQPQVARDLGMSPTSGILLHGPPGCGKTRLAHAIAHQTGFPFYQISPAQVVSGISGESEQNIRDIFSKAHRTAPSIIFIDEIDAIASKREDLSREMEKRIVTQLLTSMDQPDNNSNVLVIGATNRPNVIDSALRRPGRFDREIYIGMPDESAREEILSVLTRNVKLQGPIDLLKIAKSTSAFVASDLKSVISHAGSLAMKRIIYERYTTAEPPEDCFSEPWSPEEVDKAAITMSDLEEAVKMVQSSERREGFNPIPDVKWEDVGGLDLLRNEFDDYIIGPIKCPGDYEGFGLDLSTGFLLYGPPGCDKPLVAKAVANAAGVSFRHIKGPDILNEYVGVSENNVRKIFDAARTCAPCILFFDELDALTTTRGKGKEGASVTDRVLNQLLIELDGAEHRKNVFVIGATNRPEVIDPALLRPGRLGRLVYVPLPSPDQRVLILKTLARKYPIDDSTDLSAIGRSEACENMSGADLALLMEEAVMTVVRKNRTSNHGKEMTIKPWHIEEALTRVFPSVSDKQKQYYQRLSERFSPSFHRNVRE 706
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01904 706 Gene3D - 125 313 IPR027417 -
Cca10g01904 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 408 IPR027417 -
Cca10g01904 706 MobiDBLite consensus disorder prediction 64 97 - -
Cca10g01904 706 PANTHER AAA-FAMILY ATPASE 32 695 - -
Cca10g01904 706 Gene3D - 598 675 - -
Cca10g01904 706 CDD AAA 180 313 - -
Cca10g01904 706 Pfam Nucleolin binding domain 7 60 IPR031996 -
Cca10g01904 706 Gene3D - 423 689 IPR027417 -
Cca10g01904 706 Pfam ATPase family associated with various cellular activities (AAA) 466 596 IPR003959 GO:0005524|GO:0016887
Cca10g01904 706 Pfam ATPase family associated with various cellular activities (AAA) 184 313 IPR003959 GO:0005524|GO:0016887
Cca10g01904 706 MobiDBLite consensus disorder prediction 15 29 - -
Cca10g01904 706 ProSitePatterns AAA-protein family signature. 284 302 IPR003960 GO:0005524|GO:0016887
Cca10g01904 706 Gene3D - 315 417 - -
Cca10g01904 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 695 IPR027417 -
Cca10g01904 706 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 32 695 - -
Cca10g01904 706 SMART AAA_5 180 316 IPR003593 -
Cca10g01904 706 SMART AAA_5 461 599 IPR003593 -
Cca10g01904 706 CDD AAA 464 597 - -
Cca10g01904 706 MobiDBLite consensus disorder prediction 70 84 - -
Cca10g01904 706 ProSitePatterns AAA-protein family signature. 567 585 IPR003960 GO:0005524|GO:0016887
Cca10g01904 706 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca10g01904 Cca-Chr10 36292353 36297731 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01904 397 701 Calmodulin-binding Proteins AT3G56690 39.016 1.89e-60 218