Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01903 ATGGACATGGACGTTGACGAAACTTCTGCACCTAACGAGGGAAAGTCCGTTTTGGTGATCTTGGTGGGAGCACCAGGGAGCGGCAAGTCCACCTTCTGCGAAGAGGTTATTAGTTCCTCTGCTCGCCCTTGGCTTCGCGTTTGTCAGGACACTATTGGAAATGGTAAAGCAGGAAGTAAAGCTCAGTGCTTAAGCAGTGCAACTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGATAGGTGCAATCTTGACAGAGAACAGCGCTCAGAATTTATAAAGCTTGGTGATGGACCCCAAATAGATGTCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTTTGTATTTCTCGGTCTGTCAAACGGACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAATAAAGAGCTTCCCAAATTAAGTGAAGGATTTAACCGGATAACATTTTGTCAGAATGAGAGTGATGTCAAAAGTGCTATTAATACATACAGCACACTTGGGCCACTGGATGGTCTTCCACATGGCTGTTTTGGTCAGAAGGCAGATTCCAAAATTCAAGTAGGTATAATGAAGTTTCTGAAAAAAGCAGAGGCCCCAGTTGATGCTGCATCTGGACAGAGTGGCATTGGAGACCCTACTTCCCAGACTCCTGGGAAAAGTAATTCCTGCTGCAAAGATAAGGAAACATTTTGCTCAGTTCTAGATAATGCCAACTTAGAGACAAAGGAAGCTGAAGGCCAAGCAGTTAGCTCTGCTGGTTCCCATGCCAATCAAGTTTCTCTGGATGATATTCCCACTCTAGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACCATGAGAAGGCAGCTGATATTATTGTTGAGAAGGTTGCAGAGTTCTCAAATAAGTTAAAGAATGCCAGACTTGTTCTAGTTGACTTGTCTCATAAATCAAAGATTCTGTCCTTAATTAAAGCTAAAGTTGTGGAAAAAAACATTGACACCCAAAAGTTCTTTACCCATGTTGGGGACATTACTCACCTTTATTCCAGGGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAACTGGCGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCTGAACTGGAATCTGCAACAAAAGAAAAAGTAAAATCTCTTTTGCCGGGGAATGCTGCAGTTGTCCCTCTACCTTCATCTTCCCCTTTGTTCACCAGAGAGGGTGTGACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGGCCAAATTGTCTGAATAATGACTATGATAAAGGTTGTAAAATTCTCCAGGATGCTTATACTTCATTGTTTGAAGGTTTTGCATCAATTGTGAGGAACCAGGCAGGGCAACAAGTGGTAAAAAAAGAAAACCTAGGAAGAAAATCTTTGGAGTTGCAGGTTCAGTCTGATTGTTTTGTCAGAAGTATTTTCACAAATACCGATCAAAAGAGTAAGAGAGATGATGATCATGGATCAGAAAAAAGCAAGAAATATAAGGGGATTCGGGGTGGATTTGGATCGACCTTTACTGATTCTAGAGATGAAAAGGTAGTTTCAGAGCATAGAAGAACTGAGGGGAGCATGAATAAGGCATGGGGATCATGGGCTCAAGCGCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGGTGATTTGCTTGAAATTTCCGAAGATGTTGTTGTATTGAATGACATGTATCCTAAGGCACGGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGATTTTCTGGCAGATGTCCAAAAGGAGCACCTTCAGTTATTGAGGAAGATGCATGATGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGAACGAGAATGCTTCTCTGGTATTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAACACATTTAAAGAATAAGAAGCACTGGAACTCGTTTAACACTGGTTTCTTTCGTGACTCGGTTGATGTAATGGATGAGATATCTACTGATGGGAAGGCAACACTGAAAGATGATGACAAGTTACTGTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCGCATCCAAACATACCTCGGTTAAAATCACATATTAGTAGCTGCCAATCCTCCTTTCCTGCTAACCTACTTCAAAATGGACGTTTGGTTCATGCACCAGGGGAACCTCTTAACAATGTCCAGTAG 2292 0.4228 MDMDVDETSAPNEGKSVLVILVGAPGSGKSTFCEEVISSSARPWLRVCQDTIGNGKAGSKAQCLSSATRALKDGKSVFIDRCNLDREQRSEFIKLGDGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQNKELPKLSEGFNRITFCQNESDVKSAINTYSTLGPLDGLPHGCFGQKADSKIQVGIMKFLKKAEAPVDAASGQSGIGDPTSQTPGKSNSCCKDKETFCSVLDNANLETKEAEGQAVSSAGSHANQVSLDDIPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKLKNARLVLVDLSHKSKILSLIKAKVVEKNIDTQKFFTHVGDITHLYSRGGLRCNVIANAANWRLKPGGGGVNAAIFNAAGPELESATKEKVKSLLPGNAAVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYDKGCKILQDAYTSLFEGFASIVRNQAGQQVVKKENLGRKSLELQVQSDCFVRSIFTNTDQKSKRDDDHGSEKSKKYKGIRGGFGSTFTDSRDEKVVSEHRRTEGSMNKAWGSWAQALHQIAMHPEKHKGDLLEISEDVVVLNDMYPKARKHVLVLARTGGLDFLADVQKEHLQLLRKMHDVGLKWAEKFLNENASLVFRLGYHSAPSMRQLHLHVISQDFESTHLKNKKHWNSFNTGFFRDSVDVMDEISTDGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQSSFPANLLQNGRLVHAPGEPLNNVQ 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01903 763 Gene3D - 559 741 IPR036265 -
Cca10g01903 763 SUPERFAMILY HIT-like 557 721 IPR036265 -
Cca10g01903 763 Gene3D Leucine Aminopeptidase, subunit E, domain 1 323 469 IPR043472 -
Cca10g01903 763 Gene3D Leucine Aminopeptidase, subunit E, domain 1 227 322 IPR043472 -
Cca10g01903 763 SUPERFAMILY Macro domain-like 273 320 IPR043472 -
Cca10g01903 763 SMART YBR022w_8 342 482 IPR002589 -
Cca10g01903 763 MobiDBLite consensus disorder prediction 507 527 - -
Cca10g01903 763 ProSiteProfiles Macro domain profile. 330 568 IPR002589 -
Cca10g01903 763 PANTHER APRATAXIN-RELATED 15 756 - -
Cca10g01903 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 161 IPR027417 -
Cca10g01903 763 Gene3D - 3 175 IPR027417 -
Cca10g01903 763 MobiDBLite consensus disorder prediction 507 525 - -
Cca10g01903 763 Pfam Scavenger mRNA decapping enzyme C-term binding 567 677 - -
Cca10g01903 763 PANTHER APRATAXIN 15 756 IPR026963 GO:0003677|GO:0006281|GO:0033699
Cca10g01903 763 ProSitePatterns HIT domain signature. 646 664 IPR019808 -
Cca10g01903 763 Pfam AAA domain 18 145 - -
Cca10g01903 763 Pfam C2HE / C2H2 / C2HC zinc-binding finger 682 735 IPR032566 -
Cca10g01903 763 Pfam Macro domain 365 444 IPR002589 -
Cca10g01903 763 SUPERFAMILY Macro domain-like 323 463 IPR043472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01903 7 752 C2H2 Transcription Factor Family AT5G01310 59.036 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01903 K10863 - gmx:100786762 1333.16