Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01900 ATGGAGGCCCCAAAACGTTTGCCTATGGCTAGGATTGGAACTGGATCCAAAGGACAGAGCACACCGCTATTATCTAACCATTGTAGTGTTACTGTATCCAAGAATGATGGCTACTTCTGCCATTATAATGTCGCTATGAGTTATGATGGAGATAGGGACTCTGTTCAAGTCAAGGGTATAGGGAGAAAGGTCTTAGACGAAGTTTGCAAGATATATGGTGAACTGAAAAACTTAAATTTTGCATATGATGGGGAAAAAAATTTATTCACTGTTGGTTCTTTATCAAAAAATAGGCTTGACTTCACTGTTGTGTTGGAGGAAGTTTCATCGAGGGTTGGAAGGAATAGAAACCCTGACCTGATTCTTCTTGAAGGAGATGCAAAAAGAAAGAGGCGTCAATCTCGGTCCAAAACTATCAAAGTGGAACTCAATTATGTAACCAAAATTCCAATGAAAGCAATTGCAGATGCATTGCGTGGTCTGGAATCTGAGAACTTTCAGGAAGCACTTAGAGTTCTGGACATCATACTGAGACAACATGCTTCAAACAGGGACTGCCTTCTTGTCCGTCAATCTTTCTTTCATAACTATCCAAGGAATCGTATTGATATAGGAGGTGGTGTGCAAGCTTGCCGTGGTTTTCATTCAAGCTTTCGAGCTACACAAGGAGGTTTAACTCTCAACATTGATGTGTCAAATACAATAATATTAGAGACTGGCCCTGTGTTGGAGTTCCTTATCAAGAATCAGAATGTTAATAATGCATACAGAATTGATTGGAACAAGGCGAAAAGAATGTTGAAGAATCTAAGAATCCAGGCTAATGGTATTGAGTTCAAAATCACTGGACTTAGTGATAACACTTGCAGGAACCAGAGATTTCTATTAAGGCAAAAGAATGGGAATGGTGAAGTGCAAGAAAGTGAAATCACGGTTTATGACTACTTTGCTCGCCATAAAATGATTATCCCGAAGCAATCTGCTGATATGCCATGTATCAATGTTGGCAAACCAAAACGCCCGTGTTATTTTCCAATAGAGCTATGTGAATTGGTCTCGTTGCAGCGGTACACTAAGGCACTAACAAATTTGCAAAGAACTCAGCTAGTGACTGCGACAAGGCAATTACCCGAGGAAAAGATAAAAGCTGTTCAAAATTCCTTAAGAAGCAGCGGATATAATGATGAACCTATGCTTCGCTCTTGTGGAATTACCATTCAACCTAACCTTTCTGTGGTCGAGGGTCGTGTATTGCGACCCCCAAATCTTCTAGTTGGAAAGGACGAGGAAATCATTCCACAGAATGGACGCTGGAATTTCAACAAGAAGAGACTATATCACCCTGTGTCGATTAAGAGTTGGGCCATTGTGAACTTCTCAAGTGGGTATGACACATATCATCTGAAGGAATTCATTAAGAAGAATGCTAGAGAAAAAGGGATGGATATTAAAGCTCCATACAAAATAATATTTGAAGAGAAGAGTGACTTCAGGCATATACCAGCAGAAGTCAGGGTAGAGAAAATGTATGCTAATGTTATGGGCTCTATGCCAGAACGTCCTCAGTTTCTGTTGTGTATTCTTCCAGAGAGAAAGAATTCTGATCTTTATGGTCCTTGGAAAAGGCGATGTCTTGTTGATGGAGGGGTTATAACACAATGTATTGCACCAACAAAACCCCTGAACGATCAGTACATTACTAACGTACTCTTGAAGATTAATGCAAAGTTTGGCGGGGTGAATTCTTTTCTGTCAACCGAGCGTTATGAATCCATTCCTCATGTTTCGACTGTGCCTACCTTAATTCTTGGTATGGATGTTTCACATGGATCTCCTGGTCGAGCAGATGTGCCCTCTATAGCTGCGGTTGCGAGTTCAAGGTGTTGGCCACAAATTACACGTTATAGAGCTACAGTTCGTACTCAATCATCAAAAGTTGAGATGATCCAATCTTTATTCAAGCCTGTGGATAATACCCAGGACAAGGGTATCATCAGGGAAGTGCTTGAGGAATTCACCGCTACTGCAAATGGTCGTCGTAAGCCTGAACACATCATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAGGTGCTCAACTTTGAATTAAGTCAAATCATCGAGGCATGCAAACATTTTGATGAAAAGTGGGAGCCGAAGTTCGCTCTGATTGTTGCCCAGAAGAATCATCATACTAGGTTCTTCTTGGCGGATCCTCCACAAACACCTCATCGTGGTCGACCTTCACCTGCACAACTGAATGTTCAACCTGGTACCATTATTGACAAAAATGTTTGTCATCCCAGAAACAATGACTTCTACTTGTGTGCTCAAGCTGGAATGATTGGGACAACTCGACCTACTCACTACCATGTTTTGCATGATGAAATCGGGTTCACAGCTGATGAAATACAGGAATTAGTGCATTCTCTATCTTATACGTATCAGAGGAGCACAAGTGCTGTATCATTAGTTGCTCCCGTTTGCTATGCCCACTTGGCAGCTGCTCAGATGGCACAATTTGTTAAGTTTGACGAACATACTGAGACGTCTTCTTCCAGCCATGGTGGAGTCACCTCTGCTGCTGCACCTCCAGTTCCTCAATTACCACGCCTTCACCATTCAGTCAGAAACTCCATGTTCTTTTGTTAA 2658 0.4157 MEAPKRLPMARIGTGSKGQSTPLLSNHCSVTVSKNDGYFCHYNVAMSYDGDRDSVQVKGIGRKVLDEVCKIYGELKNLNFAYDGEKNLFTVGSLSKNRLDFTVVLEEVSSRVGRNRNPDLILLEGDAKRKRRQSRSKTIKVELNYVTKIPMKAIADALRGLESENFQEALRVLDIILRQHASNRDCLLVRQSFFHNYPRNRIDIGGGVQACRGFHSSFRATQGGLTLNIDVSNTIILETGPVLEFLIKNQNVNNAYRIDWNKAKRMLKNLRIQANGIEFKITGLSDNTCRNQRFLLRQKNGNGEVQESEITVYDYFARHKMIIPKQSADMPCINVGKPKRPCYFPIELCELVSLQRYTKALTNLQRTQLVTATRQLPEEKIKAVQNSLRSSGYNDEPMLRSCGITIQPNLSVVEGRVLRPPNLLVGKDEEIIPQNGRWNFNKKRLYHPVSIKSWAIVNFSSGYDTYHLKEFIKKNAREKGMDIKAPYKIIFEEKSDFRHIPAEVRVEKMYANVMGSMPERPQFLLCILPERKNSDLYGPWKRRCLVDGGVITQCIAPTKPLNDQYITNVLLKINAKFGGVNSFLSTERYESIPHVSTVPTLILGMDVSHGSPGRADVPSIAAVASSRCWPQITRYRATVRTQSSKVEMIQSLFKPVDNTQDKGIIREVLEEFTATANGRRKPEHIIIFRDGVSESQFNQVLNFELSQIIEACKHFDEKWEPKFALIVAQKNHHTRFFLADPPQTPHRGRPSPAQLNVQPGTIIDKNVCHPRNNDFYLCAQAGMIGTTRPTHYHVLHDEIGFTADEIQELVHSLSYTYQRSTSAVSLVAPVCYAHLAAAQMAQFVKFDEHTETSSSSHGGVTSAAAPPVPQLPRLHHSVRNSMFFC 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01900 885 Gene3D - 417 586 - -
Cca10g01900 885 SMART Piwi_a_2 523 845 IPR003165 GO:0003676
Cca10g01900 885 CDD PAZ_argonaute_like 239 352 - -
Cca10g01900 885 SUPERFAMILY Ribonuclease H-like 517 843 IPR012337 -
Cca10g01900 885 Pfam Argonaute linker 2 domain 382 424 IPR032472 -
Cca10g01900 885 Gene3D paz domain 233 357 - -
Cca10g01900 885 CDD Piwi_ago-like 397 839 IPR045246 -
Cca10g01900 885 Pfam Mid domain of argonaute 433 474 IPR032473 -
Cca10g01900 885 Pfam N-terminal domain of argonaute 20 177 IPR032474 -
Cca10g01900 885 PANTHER BNAC09G36860D PROTEIN 7 880 - -
Cca10g01900 885 Gene3D - 591 885 IPR036397 GO:0003676
Cca10g01900 885 SUPERFAMILY PAZ domain 234 394 IPR036085 GO:0005515
Cca10g01900 885 ProSiteProfiles Piwi domain profile. 523 845 IPR003165 GO:0003676
Cca10g01900 885 Pfam Argonaute linker 1 domain 189 236 IPR014811 -
Cca10g01900 885 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 880 - -
Cca10g01900 885 Pfam Piwi domain 524 845 IPR003165 GO:0003676
Cca10g01900 885 Pfam PAZ domain 243 369 IPR003100 GO:0005515
Cca10g01900 885 SMART DUF1785_2 187 239 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01900 Cca-Chr10 36226196 36235056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01900 6 885 Eukaryotic Initiation Factors Gene Family AT1G48410 33.115 4.80e-145 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01900 K11593 - gmx:100812218 1190.25