Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01898 ATGGGGTCTCAAGGTGGTGGTGGTGATGAAAATGGAAGACATTCACAGCAGCAGCAGCCTTTGGTGCAGCAAAATTCAATGTACAGTCTAACACTCGATGAAGTTCAGAATCAATTAGGTGACTTAGGGAAACCACTAAGTAGTATGAACCTTGATGAGCTTCTAAAAAATGTGTGGAGTGCTGAGGCGAACCATTCCACTGGTGTGGACATTGAGGGTACTGCTCCAACTAGTAAAGCTGCACATCAGCATCAGGCTAGTTTGTCATTAACTGGTGCTCTAAGCAGGAAGACTGTTGATGAGGTATGGAGAGATATACAACGAAGCAAAGATAACAAAGATAAGAAGTCTCAAGAGAGACAGCCTACACTCGGAGAGATGACGTTGGAGGATTTCTTGGTAAAAGCAGGGATTGTTGCTGAAGCATCTTCTAATAGAAAGAATGACGGTCTTACACTTGGTGTTGATTCAAATGTAGCAGCACCACAGTTTCCTCAGCATGGTCCTTGGATACAGTATCCACAAACACAATATCAGCATCCACAACAGGGTTTAATGGGGATTTATATGCCTAGCCAGAATACAGTGCAGCCATTACACATGGGAGCTGGTGCTGCATCAGATGTTCCATATGCAGATAGTCAGGTAGCATTGTCTTCACCTGTTATGTTAAACTTGTCAGATTCTAGGAGACATGGGAGAAAACGGGGCACATCAGAGGATATGGTAGAGAGGACTGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGCGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGGCTTACACAACTGAGTTAGAGCACAAAGTCTCACGTTTGGAAGAAGAAAATGAAAAGTTGAGGAGACAGAAGGAGCTAGAGAAAATGTTATCCAGTGTCCCACCTCCTGAACCTAGATACCAGATTCGGCGAACGACATCGGCCTCGTTCTGA 960 0.4469 MGSQGGGGDENGRHSQQQQPLVQQNSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWSAEANHSTGVDIEGTAPTSKAAHQHQASLSLTGALSRKTVDEVWRDIQRSKDNKDKKSQERQPTLGEMTLEDFLVKAGIVAEASSNRKNDGLTLGVDSNVAAPQFPQHGPWIQYPQTQYQHPQQGLMGIYMPSQNTVQPLHMGAGAASDVPYADSQVALSSPVMLNLSDSRRHGRKRGTSEDMVERTVERRQKRMIKNRESAARSRARKQAYTTELEHKVSRLEEENEKLRRQKELEKMLSSVPPPEPRYQIRRTTSASF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01898 319 Coils Coil 268 299 - -
Cca10g01898 319 PANTHER BZIP TRANSCRIPTION FACTOR 8 317 - -
Cca10g01898 319 Gene3D - 247 301 - -
Cca10g01898 319 MobiDBLite consensus disorder prediction 228 297 - -
Cca10g01898 319 CDD bZIP_plant_BZIP46 249 298 - -
Cca10g01898 319 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 8 317 IPR043452 GO:0003700|GO:0045893
Cca10g01898 319 Pfam bZIP transcription factor 249 299 IPR004827 GO:0003700|GO:0006355
Cca10g01898 319 MobiDBLite consensus disorder prediction 9 26 - -
Cca10g01898 319 SUPERFAMILY Leucine zipper domain 249 294 IPR046347 GO:0003700|GO:0006355
Cca10g01898 319 SMART brlzneu 245 301 IPR004827 GO:0003700|GO:0006355
Cca10g01898 319 MobiDBLite consensus disorder prediction 227 319 - -
Cca10g01898 319 MobiDBLite consensus disorder prediction 1 26 - -
Cca10g01898 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 292 IPR004827 GO:0003700|GO:0006355
Cca10g01898 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01898 Cca-Chr10 36201932 36205324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01898 19 319 bZIP Transcription Factor Family AT3G56850 51.961 3.01e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca10g01898 bZIP_1 1.4e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01898 K14432 - gmx:100811685 515.768