Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01897 ATGGATATAGATCTTCGGTTACCTTCTGGTGAGCATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGTTGGACAGTGAAGAAAAATTACACAATGGAGGTATAGATGGCAGAAATATAGTTGATGCTGGTATTGAAGTGCATGCTCTAAATGGTGGAGATTTGAATTCACCGACAGTTGATATTGTAATGTTTAAGGAAGATTCAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCCCATGGGGAAGCTTATTCTTTTTATCAAGAATACGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCGAGATATGGAACAAAACGAGAGTATGACAAACAATTTAATCGACCTCGTGCACGACAGAACAAACAAGAGTCTGAAAATTCAACTGGTAGAAGATCTTGTTCAAAAACTGACTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCACGAGCTCTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCCAGGCAGTTTGCTGAATACAAAACTGTGGCTGGTCTCAAGAATGATAAGAATCCATTTGATAAAGGTCGAAATTTGGGTCTGGAGTCTggggaggctaaactcatgctcgaatttttcatacagatgcaaaatataaattctaacttcttttatgcagtagatcttggtgaagatcatcgtctgaaaaatcttttatggatcgatgcaaaaagtaggcatgactatatcaacttttgtgacgtagtgtcatttgataccacctatgttagaaacaaatataagatgcctcttgcactttttgttggagtgaaccagcactaccaatttacattacttggatgtgccttgatatcagatgaaagtgctgctactttttcatggctatttcgtacgtggctgaaaggagttggtggtcaagttccgaaagttataattactgaccatgacaagacattgaagtcagttatttcagaaatagttcctaattctactcattgtgtttgcttatggcatgtattggggaagatatctgaaaatttagctcctgtaattaaaaagcatgagaattttatggcaaaatttgaaaaatgcatatataggtccttgaccagtgatgattttgagaagagatggtggaaaattgttgataggtttgaacttcgagaggatgaatgcatgcagacattgtatgaagatcgcaagttatgggcaccgacattcatgaaggatgttttcttaggtggcatgtctactgtccagcggtctgaaagtgtaaattccttctttgacaaatatgttcataagaagacttctgttcaagattttgtcaaacagtatgaagcgatcttgcaagacaggtatgaagaggaagcaaaagcagattctgatacatggaataaagttgcaaccttaaaaactccttcacctctagagaagagtgttgcaggaatttttacgcatgctgtattcaagaagattcaagctgaggttgtaggtgcagttgcttgtcatcctaaagctgacaggcaggatgatacaaccattgttcacagggttcatgatatggaaacagataaagacttctttgttgtggtgaatcaaaaatttgagttgtcatgtatatgtcggttatttgagtacagaggttatctttgtcgacatgcattgattgttcttcaatattctggtcagccagtgttcccatctcaatatattttgagacggtggacaaaagatgcaaagatcaggaatataatgggagaaGAATCTGAACACATGCTGACTAGGGTGCAAAGGTATAATGATTTATGTCAGCGAGCACTAAAATTGAGTGAAGAGGGATCGTTGTCCCAAGAGAGTTATAGTATTGCATTCCATGCGCTACATGAAGCACACAAAAGTTGTGTGAGTGTTAACAATTCTAGTAAGAGTCCTACAGAAGTTGGTACATCAGGGGCTCATGGTCAGCTTTCCACTGAAGAAGATACCCAAAGTAGAAATATGGGCAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATGACAGTTGGGGCACTAGACAACTTGCAACAAATGGACAAATTCAGCACAAGAGCTGCAGTAACCCTTGAAGGATATTATGGCACACAACAAAGCGTGCAAGGGATGTTGAACTTAATGGGCCCAACACGTGATGATTACTACGGGAATCAGCAGACACTTCAGGGGCTGGGACCGATAAGTTCGATACCAACCAATCACGATGGTTATTATGGTGCACATCAGGGCATGCCTGGTCTGGCACAACTGGATTTTTTACGATCTAGTTTCACATATGGCATTCGGGATGATACTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCTAGACATGCATGA 2529 0.2179 MDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVDAGIEVHALNGGDLNSPTVDIVMFKEDSNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKQFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVAGLKNDKNPFDKGRNLGLESGEAKLMLEFFIQMQNINSNFFYAVDLGEDHRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISEIVPNSTHCVCLWHVLGKISENLAPVIKKHENFMAKFEKCIYRSLTSDDFEKRWWKIVDRFELREDECMQTLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGIFTHAVFKKIQAEVVGAVACHPKADRQDDTTIVHRVHDMETDKDFFVVVNQKFELSCICRLFEYRGYLCRHALIVLQYSGQPVFPSQYILRRWTKDAKIRNIMGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYSIAFHALHEAHKSCVSVNNSSKSPTEVGTSGAHGQLSTEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMDKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTNHDGYYGAHQGMPGLAQLDFLRSSFTYGIRDDTNVRATQLHEDPSRHA 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01897 842 MobiDBLite consensus disorder prediction 132 165 - -
Cca10g01897 842 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 777 IPR031052 GO:0006355
Cca10g01897 842 SMART 26again6 578 605 IPR006564 GO:0008270
Cca10g01897 842 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Cca10g01897 842 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 47 777 - -
Cca10g01897 842 Pfam MULE transposase domain 288 380 IPR018289 -
Cca10g01897 842 ProSiteProfiles Zinc finger SWIM-type profile. 568 603 IPR007527 GO:0008270
Cca10g01897 842 MobiDBLite consensus disorder prediction 678 705 - -
Cca10g01897 842 MobiDBLite consensus disorder prediction 678 725 - -
Cca10g01897 842 Pfam SWIM zinc finger 568 601 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01897 Cca-Chr10 36178927 36186656 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca10g01897 FAR1 2.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01897 - - gmx:100817034 1624.76