Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01874 ATGATGAGAACTGAAGCTCAGAGGGTAGTGGTGATCCAGGATGCATCAAGAAATGTTGGTTCAAAGGCAATCCTTGGGGCCCTGGAAAAATTTTCTCTTAAAGCTGGAGATCAGCTTATAATTGTTGCTATCCTTGATTGGATTAGCAGTCCCAGTATGTTTTCTTTCCTTCCAAGAAAAAGTTTGGGTTACATGGTCAGAGTTGATTCCAATTACAGTTCATTTATCTCAACAAACAAGAAAATAATTCTGAAAAGGCGTACCAAAAAAAAGGAAGAATATCTCATGAATGAGAAAGTCAAGGAGATCTCTGACTACTGTAAATTGAATGAGATTGCATTCCAAATAGAAGTGCTTGTAGGCCCTTTTGCAGAGGTTGCTTCTAATGCTGCCAAGGAATTTCAGGCGACAAGTTTGATACTAGTTAGACAGATTCACAAAGATATGAAGCAATTCATGCGTAATCTTCCTTGTGGTATGTATAGGATAACAAGTGACAATTCAATTGAGAGGTTGAAAGATCCAAAATCAATAGACAGTATGAAAAAACATGCTAACAGGCAAGAAAATGTAAGCTATAATGAAATGCTTCCGGGAAGTGAAGAGGAAGAACGTTCTCAACAGATGTCCATGTCTTCATCAAGTGATTTGTTGGTTTCAAGTCAGTGGAGTACAGAAGTCTCCACTTCTAGTCTTGGAAGCTCACAGTATAGCTATCAAAAATACAAAGAGGCAAATTTTTATTCAAATATACAACAAGAAACAAGGAACCAATCACTATTTCACATTTCAGAGAATGAAGCAACACAAATAGAAGTAAATCAACAAGAGAAGCACATTACAAATAATGAAAAATCTCATGTGGAGGAAGAATTTACAAATCCAGTTTGTTCTGTGTGCCATAATAGACGACCAAGAGTTGGATGGAAGAGAGATTTCAATTATGCAGAGCTCTATACAGCTACAAATGGATTTTCTCCCAAGAACTTTTTGTCTGAAGGTGGATTTGGATCTGTCTACAAAGGTTTGTTGAATGGAATGAAGATTGCTGTTAAGCAACATAATAGTGCTGGCTTCCAAGGAGAGAAGGAATTCAAGGCTGAAGTGAATGTACTTAGTAAAGCTAGACATGAGAATGTGGTTGTGCTGCTAGGTTCATGCTCGGAGGGAAATAATAGGCTTCTTGTGTATGAATATGTATGCAATGGCTCACTTGACCAACACCTTTCAGAACACTCTCGAACACCTCTTAGTTGGGAAGATAGGATCAATATAGCTATTGGAGCTGCCAAAGGCTTGCTGTACTTGCACATGAACAATATACTACACAGAGATGTGAGACCAAACAACATCCTTATAACACATGATCGTCAACCATTGCTTGGAGACTTTGGGTTAGCAAGAAATCAAAATCAAGACTCAATACACTCTACAGAAGTTATTGGAACTTTGGGGTATTTGGCACCAGAATATGCTGAACATGGCAAAGTATCTACCAAAACAGATGTATATTCTTTTGGGGTGGTTCTACTACAACTAATTACAGGGATGAGAACTACAGATAAACGACTTGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCGCTTTTAAAAGTGAGGAACTATCCAGATTTAATTGATGAAAAGATCAACTCTCATAATATCCATCAACTATTTTGGATGGTTCGAATGGCAGAGAAATGTCTAAGTAGGAATCCTCAAATGAGACTAAATATGATTCAGATTGTTGATGCTTTGACTGACATAGTGGAAGGCAGAACATGTGACACTACATTAAGGGATTACTCCCCTGCAAGGTCAGATTCAACCTATAGTAGTGCATCAGACTCTAATGAATCTGATGATGAAATGCAAGAATCCTTCAAGTTCGAAAATGAGTTACTAAATCACGGTCCAGAATCCATAGAAAGTAATAGCATAGGTCAGATGATGCATATGATTGTCAGACAACCACCATCTCCTCCAATTCAAAGGATCTCTTCAAGCAGCTCAAGCTTATTTAAGTTTCATGATGAGTCAATGAGTGATGGTGAAGCACCAAATGAAGGGGAAATAGAAATATCAAAATCCAATGAGATGTTACTCAATTAA 2112 0.3788 MMRTEAQRVVVIQDASRNVGSKAILGALEKFSLKAGDQLIIVAILDWISSPSMFSFLPRKSLGYMVRVDSNYSSFISTNKKIILKRRTKKKEEYLMNEKVKEISDYCKLNEIAFQIEVLVGPFAEVASNAAKEFQATSLILVRQIHKDMKQFMRNLPCGMYRITSDNSIERLKDPKSIDSMKKHANRQENVSYNEMLPGSEEEERSQQMSMSSSSDLLVSSQWSTEVSTSSLGSSQYSYQKYKEANFYSNIQQETRNQSLFHISENEATQIEVNQQEKHITNNEKSHVEEEFTNPVCSVCHNRRPRVGWKRDFNYAELYTATNGFSPKNFLSEGGFGSVYKGLLNGMKIAVKQHNSAGFQGEKEFKAEVNVLSKARHENVVVLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRTPLSWEDRINIAIGAAKGLLYLHMNNILHRDVRPNNILITHDRQPLLGDFGLARNQNQDSIHSTEVIGTLGYLAPEYAEHGKVSTKTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKVRNYPDLIDEKINSHNIHQLFWMVRMAEKCLSRNPQMRLNMIQIVDALTDIVEGRTCDTTLRDYSPARSDSTYSSASDSNESDDEMQESFKFENELLNHGPESIESNSIGQMMHMIVRQPPSPPIQRISSSSSSLFKFHDESMSDGEAPNEGEIEISKSNEMLLN 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01874 703 SUPERFAMILY Protein kinase-like (PK-like) 308 586 IPR011009 -
Cca10g01874 703 MobiDBLite consensus disorder prediction 599 626 - -
Cca10g01874 703 MobiDBLite consensus disorder prediction 661 677 - -
Cca10g01874 703 MobiDBLite consensus disorder prediction 657 703 - -
Cca10g01874 703 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 614 - -
Cca10g01874 703 MobiDBLite consensus disorder prediction 173 215 - -
Cca10g01874 703 MobiDBLite consensus disorder prediction 600 618 - -
Cca10g01874 703 Gene3D Phosphorylase Kinase; domain 1 296 399 - -
Cca10g01874 703 SMART tyrkin_6 325 586 IPR020635 GO:0004713|GO:0006468
Cca10g01874 703 MobiDBLite consensus disorder prediction 678 692 - -
Cca10g01874 703 Pfam Protein tyrosine and serine/threonine kinase 330 585 IPR001245 GO:0004672|GO:0006468
Cca10g01874 703 Gene3D Transferase(Phosphotransferase) domain 1 400 603 - -
Cca10g01874 703 ProSiteProfiles Protein kinase domain profile. 325 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01874 703 ProSitePatterns Tyrosine protein kinases specific active-site signature. 441 453 IPR008266 GO:0004672|GO:0006468
Cca10g01874 703 PANTHER OS01G0253100 PROTEIN 18 614 IPR045271 GO:0004714|GO:0006468
Cca10g01874 703 MobiDBLite consensus disorder prediction 173 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01874 Cca-Chr10 35564808 35573434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01874 313 592 Trihelix Transcription Factor Family AT5G38560 45.667 1.35e-74 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca10g01874 PK_Tyr_Ser-Thr 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01874 - - gsj:114417376 1004.97