Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01871 ATTGGAAATGATCTTTCTCAGTTTGTGGGACCCATTTTGCTTAATCATCTTCTAGATTCAATGCAAAGAGGAGATCCATCTTGGATTGGTTACATATACGCCTTCTCTATATTTGTTGGAGTGACAGTTGGTGTTCTTTGTGAAGCACAGTATTTCCAGAATGTTATGCGTGTTGGTTTTCGGCTTAGATCAACCTTGGTGGCTGCTATATTTAGAAAATCTTTAAGGCTAACTAACGATGGTCGAAAGCGATTCGCATCTGGGAAGCTTATGAATATGATAACAACAGATGCCAATGCATTACAGCAAATTTGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCACTGTAGCTATGGTTCTCCTATACCAGCAACTAGGTGTTGCTTCACTTATTGGATCATTAATGCTAGTTCTTATTATCCCACTGCAGCAGACATTTGTGATTAGCAAAATGCGAAAACTGACAAAGGAAGGACTGCAACAGACCGACAAAAGGGTTGGTCTCATGAATGAAATTCTGGCTGCCATGGATACCGTAAAATGTTATGCATGGGAAACAAGCTTTCAATCTAGAATTCTAAGCATAAGAGATGACGAGCTATCATGGTTCCGCAAAGCCCAGCTACTATATGCTCTTAACACTTTCATACTAAACAGCATCCCCGTTCTTGTGACGGTGACCTCATTTGGAATGTTTACTTTACTGGGTGGAGAATTGACACCTGCAAGGGCATTTACCTCATTATCTCTGTTTTCCGTTTTGCGCTTTCCTTTAAATATGCTACCAAACTTACTAAGTCAGGTTGTAGCAAATGCAAATGTCTCATTGCAACGTCTGGAGGAACTGTTCTTAGCTGAGGAGAGAAATTTAAAACAAAATCCACCTATTGAACCTGGACTGCCAGCCATCTCAATTAAAAATGGATACTTTTCATGGGATCCTAAGGACGAAAAGCCGACATTATCAAATATCAATGTGGAAATACCAGTTGGCAGCTTAGTTGCAATCATTGGCGGTACTGGAGAAGGCAAGACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCCTTTAGCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCCACAGTACGTGAAAATATACTATTTGGATCAAAATTTGAATATGAACGATATCGGAAGGTCATTGATGCCACTGCATTACAGCATGATATCAACTTGCTACCTGGACGTGATTTTACGGAGATTGGAGAAAGAGGAGTAAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCCTAGCTAGGGCTGTATACTCAAATTCCGATGTATATATATTTGATGATCCTCTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGAGCTGCGAGGAAAAACCAGGGTTCTTGTCACCAACCAGCTACATTTTCTCCCTCAGGTGGATAAAATCATTCTGGTTAATGAAGGCATGATTAAGGAGCAGGGAACCTTTGAGGAGTTGTCGAAAAGTGGGCTTCTATTTCAGAAACTGATGGAAAATGCGGGGAAAATGGAACAACAAACAGATAATAGCAAAGATACAGCTAGTCATGACAAGGCTAATGATTTACCCTTGAATAATGAAGCAATTGTGGAATTACCGAATGATGCAAGTTATGAGAAGAAAGGAAAATTGCGAAAATCAGTACTCATTAAGCAAGAAGAGAGGGAGACAGGCGTGGTTAGCTGGAAAGTTATAATGCGGTACAAATCTGCACTTGGAGGACTGTGGGTAGTTTCCATACTCTTTGCTTGCTATACATTAACTGAAGTTCTTCGAATTTCAAGTAGCACGTGGTTAAGTGTCTGGACATCTCAAGATTCCACTGCAGATTATGATCCGGGATATTTTCTTTTTATCTATGCACTATTCTCATTTGGACAGGTTTCGGTGGCACTTGCAAACTCTTACTGGTTGATTATTTCAAGTCTTCGTGCTGCCAAAAGACTGCACGATGCAATGCTGGATAAAATCCTCCGGGCTCCTATGGTATTCTTCCAAACTAATCCGGTTGGCCGAATAATTAATAGGTTTGCAAAAGATATGGGAGATATAGATACCAATGTTTTCAATTTGGTGAACATGTGTTTGGGGCAAGTCTGGCAACTACTTTCAACATTTGTTCTTATAGGTACTGTCAGCCCCATTTCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTACCAGAGCACGGCTCGAGAGGTGAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCTCATTTTGGTGAATCGCTGAATGGTTTGTCAAGCATTCGTGCTTATAAAGCATATGACAGAATGTCACACATTAATGGAAAATTCATGGACAACAACATCAGATTTACTCTTGTGAATATAAGTTCAAATCGGTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGTTGATTGCAACATCTGCTGTCTTGCAGAATGGAAGAGCTGCAAACCAGGCCATGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTAAGTGGTGTCCTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATGCTGTTGAGCGTGTCGACACGTATATAAATCTAGAAACTGAGGCTCCAGGTGTCATTGAGACGAACCGTCCGCCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCTGAACTTCCTCCAGTGCTGCATGGATTATCCTTTACAGTACCTCCAACTGAGAAGATAGGAGTTGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCATTATTCCGGATTGTAGAGCTACAGAAAGGAAGAATCATTATTGATGGTTGTGATATTTCTACATTTGGACTAGCAGATCTACGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGATCTATGGGAAGCGTTAGAAAGGGCGCATTTGAAGGACGTATTAAGAAGAAATTCATTTGGTCTAGATGCTCAGGTGTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTGTTAAGTTTAGCTAGAGCGTTGCTACGAAGATCAAAGGTTCTTGTTCTGGATGAAGCCACTGCTGCTGTTGATGTTAGAACTGATGCCCTTATACAGAAAACTATTAGACAAGAATTTCAGTCCTGCACAATGCTTATTATTGCACACAGACTAAACACAATAATTGACTGTAATCAGATTCTGTTGCTCGATTCTGGCCGGGTTCTTGAATATAGTTCACCAGAGGAACTCTTGCAAAATGAAGGAACTGCTTTCTACAAGATGGTGCAAAGTACTGGACCCGCAAATGCTCAATATTTATGCAGCCTAGTATTTGGAAGGACAGAGAACAACTCTAATGAATATAACAAGGAGTTGGAAAGCAAAATGAGACAGTTGGCTTCTACTCATTGGACTGCTGCTACACAGTTTGCCATAGGTGCTACACTTTCTTCATTACACCATCACCTTCAAAAGCCAAATGGTGAAGAAGGTGAAGATTTTCTTGATAAAACAAAGGATGCAGTTACAACACTCCAAGAAGTTCTAGAGGGGAAGCATGATGAATCCATAGAAGAGACACTGAATAAATACCAAATTCCTACAGATAGATGGTGGTCTACTCTCTACAAAGTTGTTGAAGGTCTTGCTGGTCTTGCTGTCTTGAAGAGGTTGCCTCTAGACAACAGTCAACAAGAGGAATATGATTTTGAAGGAAGGTCTTTTGATAACATACATCTTGAGATGTAG 3954 0.4041 IGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVTVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTNDGRKRFASGKLMNMITTDANALQQICQQLHGLWSAPFRITVAMVLLYQQLGVASLIGSLMLVLIIPLQQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDDELSWFRKAQLLYALNTFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFSVLRFPLNMLPNLLSQVVANANVSLQRLEELFLAEERNLKQNPPIEPGLPAISIKNGYFSWDPKDEKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAYVPQISWIYNATVRENILFGSKFEYERYRKVIDATALQHDINLLPGRDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEELRGKTRVLVTNQLHFLPQVDKIILVNEGMIKEQGTFEELSKSGLLFQKLMENAGKMEQQTDNSKDTASHDKANDLPLNNEAIVELPNDASYEKKGKLRKSVLIKQEERETGVVSWKVIMRYKSALGGLWVVSILFACYTLTEVLRISSSTWLSVWTSQDSTADYDPGYFLFIYALFSFGQVSVALANSYWLIISSLRAAKRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTNVFNLVNMCLGQVWQLLSTFVLIGTVSPISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMSHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWLIATSAVLQNGRAANQAMFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELQKGRIIIDGCDISTFGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVLRRNSFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNQILLLDSGRVLEYSSPEELLQNEGTAFYKMVQSTGPANAQYLCSLVFGRTENNSNEYNKELESKMRQLASTHWTAATQFAIGATLSSLHHHLQKPNGEEGEDFLDKTKDAVTTLQEVLEGKHDESIEETLNKYQIPTDRWWSTLYKVVEGLAGLAVLKRLPLDNSQQEEYDFEGRSFDNIHLEM 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01871 1317 CDD ABC_6TM_ABCC_D2 610 906 IPR044726 GO:0140359
Cca10g01871 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 530 IPR027417 -
Cca10g01871 1317 Pfam ABC transporter 325 460 IPR003439 GO:0005524
Cca10g01871 1317 CDD ABC_6TM_ABCC_D1 1 283 IPR044746 GO:0140359
Cca10g01871 1317 Pfam ABC transporter transmembrane region 612 848 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g01871 1317 Pfam ABC transporter transmembrane region 3 262 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g01871 1317 SMART AAA_5 334 514 IPR003593 -
Cca10g01871 1317 SMART AAA_5 957 1136 IPR003593 -
Cca10g01871 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 274 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g01871 1317 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1186 - -
Cca10g01871 1317 CDD ABCC_MRP_domain1 307 507 - -
Cca10g01871 1317 SUPERFAMILY ABC transporter transmembrane region 4 446 IPR036640 GO:0005524|GO:0016021
Cca10g01871 1317 Gene3D - 287 558 IPR027417 -
Cca10g01871 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1164 IPR027417 -
Cca10g01871 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 612 894 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g01871 1317 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 1 1186 - -
Cca10g01871 1317 Gene3D ABC transporter type 1, transmembrane domain 572 912 IPR036640 GO:0005524|GO:0016021
Cca10g01871 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 931 1165 IPR003439 GO:0005524
Cca10g01871 1317 Gene3D - 915 1167 IPR027417 -
Cca10g01871 1317 CDD ABCC_MRP_domain2 929 1149 - -
Cca10g01871 1317 ProSitePatterns ABC transporters family signature. 433 447 IPR017871 GO:0005524
Cca10g01871 1317 Gene3D ABC transporter type 1, transmembrane domain 1 286 IPR036640 GO:0005524|GO:0016021
Cca10g01871 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 307 531 IPR003439 GO:0005524
Cca10g01871 1317 Pfam ABC transporter 948 1096 IPR003439 GO:0005524
Cca10g01871 1317 SUPERFAMILY ABC transporter transmembrane region 597 911 IPR036640 GO:0005524|GO:0016021
Cca10g01871 1317 ProSitePatterns ABC transporters family signature. 1068 1082 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01871 Cca-Chr10 35460325 35480640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01871 291 726 Calmodulin-binding Proteins AT2G36910 24.330 3.70e-26 115