Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01869 ATGTTGATGATACACTGTGGTGATTGTAGCAAGAGAAGAACAATGATCTATCAATGGTTAAGCATAATCAAATTGGTATCCCTTCTTTGCTTTGTTGCTGGCCAGAACAGTAGCAACACACAACCACTTGATTATAGATATGCTTGTTTAGACCAATCTTCTGATCCTCCCTCTGCCACATACCAAGCCAACCTCAACAATTTGATCTCAACCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGAAACGGAACTTCAGGTGATGATGATCCAAGCAACATGGTTTATGGACTCTACCTTTGCCGTGGTGATGTGAACACCAGCCTCTGCCACTCATGTGTCCAAAACTCTAGCAGATTGCTCAAGCAGCACTGCCCCAACAATGCCACAGCAATTCTGTGGTACCCCTTTTGCCTACTGAGGTACTCAAACCAGAATTTCTTTGGCAACCTCACCATAAGGCCGAGGATTCCGATGTTCGACGCCACGCAGAATTTTACAAGTGCTGGAGAATTTGACAGTGATGCCAGGGTCTTGATGAATGGTTTGATACAAATGGGGTCAGAGACACCCTTGATGTTTGGGACACATATGTTCAACATAAATGGTACTCAGAGAAGGTATGGCTGGGTGCAGTGCAGCAGAGATATTACTGCTGAGGAGTGCAGAACATGTTTGAGTAATATGCTTGAGGATGTTGAAAATTGTTGTGAGGAGAAGAAGGTGTGGCGTGTCTTTTCGCCAAGCTGTATTCTCATGTACGAAACTCAACCATTCTTTGTGAATGATACAGCGACTCAGCAAGCCAAAGAAGGGGACAACACAAGGTGGTGGATTACAgtagtcatagttgtagctggaattgtagtagtaTCTCTATTGGCTATAAGCACATACTACTTCTGGTGCTTGAAACGGAAAAAGGACAAACTAGCTGTTCAAGAGAATGGACTAAATTCAATGTTTTCTCAAGATCAAACAGACCAGGGAGAGAGTATGAACTGTGACCTTCCTATGATACCTCTGAGTACTATTTTAAAAAGTACAGATAAATTTTCTGATAAACATAAATTGGGAAAAGGAGGATTTGGCCCTGTCTATAAGGGTGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGTGGAATTCAAGAATGAAGTATTATTGATTGCCAAATTGCAGCATCGCAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTGCTTATATATGAATACATGCCTAATTCAAGCCTTGATTTCCACCTATTTGATATGGAGAAAGGTACACATCTGGACTGGAAGCACCGATTAAACATTATTAATGGCATTGCTAAAGGGCTTCTATATCTACATGAGGACTCTAGATTAAGGGTTATTCACAGAGACTTGAAAGCTAGCAACATTCTATTAGACCATGAAATGAATCCAAAAATCTCAGACTTTGGATTGGCTAGAACATTTGGACGAGACCAAAAGCAGGCAAATACTATTAGAGTTGTTGGAACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGCTTGTTTTCAGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTGGAGATCATCAGTGGAAAAAAGAACAGTAAATTCTATTTGTCAGACCAAGGCCAAAGCCTTCTCATATATGCATGGAAGCTCTGGTGTGAAAGCAAAGGTTTGGAATTGATGGATCCGATAATAGAAAATTCATGTGTACGTAGTGAAGTTCTAAAGTGCATGCACATTGGTCTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAACAATGTCAAATGTTGTTCATATGCTTGCAAGTGACACAGTGAGTCTTCCCGTCCCCACACGGCCTGCATTTTCTGTTGGAAGAGCCGCCACTGAACGAGAGTCTTCATCAAACACTTCTATGCATTACTCTGTCAATGAAGCAACACTCTCTGAAGTGATACCAAGGTGA 2016 0.4077 MLMIHCGDCSKRRTMIYQWLSIIKLVSLLCFVAGQNSSNTQPLDYRYACLDQSSDPPSATYQANLNNLISTLSSDSATSNGFGNGTSGDDDPSNMVYGLYLCRGDVNTSLCHSCVQNSSRLLKQHCPNNATAILWYPFCLLRYSNQNFFGNLTIRPRIPMFDATQNFTSAGEFDSDARVLMNGLIQMGSETPLMFGTHMFNINGTQRRYGWVQCSRDITAEECRTCLSNMLEDVENCCEEKKVWRVFSPSCILMYETQPFFVNDTATQQAKEGDNTRWWITVVIVVAGIVVVSLLAISTYYFWCLKRKKDKLAVQENGLNSMFSQDQTDQGESMNCDLPMIPLSTILKSTDKFSDKHKLGKGGFGPVYKGVLPDGRQIAVKRLSKTSVQGVVEFKNEVLLIAKLQHRNLVRLLACCIEQNEKLLIYEYMPNSSLDFHLFDMEKGTHLDWKHRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGRDQKQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKKNSKFYLSDQGQSLLIYAWKLWCESKGLELMDPIIENSCVRSEVLKCMHIGLLCVQEDAADRPTMSNVVHMLASDTVSLPVPTRPAFSVGRAATERESSSNTSMHYSVNEATLSEVIPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01869 671 Pfam Salt stress response/antifungal 55 146 IPR002902 -
Cca10g01869 671 Pfam Salt stress response/antifungal 165 257 IPR002902 -
Cca10g01869 671 ProSiteProfiles Gnk2-homologous domain profile. 43 148 IPR002902 -
Cca10g01869 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 668 - -
Cca10g01869 671 SMART serkin_6 353 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01869 671 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 37 668 - -
Cca10g01869 671 Pfam Protein tyrosine and serine/threonine kinase 356 624 IPR001245 GO:0004672|GO:0006468
Cca10g01869 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cca10g01869 671 Gene3D Phosphorylase Kinase; domain 1 314 428 - -
Cca10g01869 671 ProSiteProfiles Gnk2-homologous domain profile. 155 260 IPR002902 -
Cca10g01869 671 ProSiteProfiles Protein kinase domain profile. 353 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01869 671 Gene3D Transferase(Phosphotransferase) domain 1 429 630 - -
Cca10g01869 671 SUPERFAMILY Protein kinase-like (PK-like) 336 655 IPR011009 -
Cca10g01869 671 CDD STKc_IRAK 359 624 - -
Cca10g01869 671 Pfam Domain of unknown function (DUF3403) 626 671 IPR021820 GO:0004674
Cca10g01869 671 Gene3D - 159 260 IPR038408 -
Cca10g01869 671 Gene3D - 44 148 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01869 Cca-Chr10 35336284 35340240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01869 21 671 Receptor kinase-like Gene Family AT4G05200 40.730 1.42e-178 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01869 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01869 - - gmx:100798691 1201.04