Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01868 ATGGCAAAAGGAACACTCATAACCCTCCCAAGATTTCTTTGCTTGATGACCCTCTTCATCATGGCAAGTGCAAGTACACAATCCCCAAACTACATGGATGTTGACTGCCACCACTCAAAAGAACAAGCCCTCACCCTGACATACCAAACCAACCTTAACGAAACCCTCTCACAGCTCTCTTCTGATGCCACCACAGGCAAAGGATATAGCCACACCACCGCAGGAAATGGCACAGTTGATGCTGTGTATGGCCTCTATGATTGCAGGGGTGATCTCACAGGATATTTCTGCCAGTTCTGTGTCTTTACTGCGGCCTCAGAGATTCTCCAGCGCTGTCCTAACAGATCCTCTGCTGTGATATGGTACGACTACTGCATTCTCAGGTACTCAAACCATAACTTTATAGGGAATCTTACCACAACCCCATCATGGTATATTTCGGAGTCAAAGAACATCACTGATCCAGAAGAACCTCAGAAAGCTGAGGATTACATGCAAAGTTTGAGAAGAGAAGCCACTGTGGAGACCAACAAGTTATATGCAATGGGAGGGTTCAATTTGAGTCATGGAGAGGAAAGGTATGGGTTGGTGCAGTGCAGTAGGGACCTTACTAATGAGGAGTGCAGCCAGTGTTTGGAGGCTATGATAGACGAAGTTCCTCAGTGTTGTCGGGCAAAGCTAGGATGGCAGGTTTTGGCTCCAAGTTGTCTTATAAAGTATAGTGATTATATGTTCTACCAGATTACTAATCAGACATCTTCTCCTTTACCTAATCCAGCTAAGAAGGGAGGTACAATTAATTCAAAAACCTTGATCATTACCATAGTGAGTGTGTTGGTGGCGGTAGCTCTACTAAGTTTCTCTGCCTACTACTGGAGGTATCTGTCTAATAAAGACTCAGAGACCACTCCTTTATCTTTTCATGACCATATTCAAAGAGAGAATGCACTGAATGCAGACCTTCCTACAATCCCTTTAATCTGGATTCGCCAGAGCACTAATAACTTTTCAGAGTTGTCTAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAATTTAGAGGATGGAACCGAAATTGCTGTCAAAAGACTCTCTAAAACATCTGGTCAAGGTTTGGAGGAGTTCAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTAGTGAGACTACTGGGTTGCTGCATTGAGGAAAATGAAAAGCTGCTTGTGTATGAGTACATGACAAATTCCGGGCTTGACTCTCACCTGTTCAATCAGGAAAAAAGAAAGCAACTAGATTGGAAGCTACGACTGAGGATTATTAATGGAATTGCAAAAGGCCTTTTGTACCTTCATGAAGACTCTAGACTTCGAATAATACATAGAGATATGAAAGCTAGCAATGTACTTCTGGATCAAGAGATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAAAGGCCAAAGTCAGGAAAATACAAACAGAGTCATGGGCACCTATGGATACATGGCTCCAGAATATGCTATGGAAGGGTTATATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATCATATGTGGAAGAAGGAATAGTGGATTCTATCTTTCAAACCATGGTCAAAGTCTTCTACTATATAGTTGGAGACTTTGGTGTGAAGGAAAAAGCTTGGAATTGTTAGATCCAATGCTAGAAAAGACATACAAAGGCAGTGAAGTTATGAAGTGCATACACATTGGTTTGTTGTGTGTTCAGGAAGATGCAGCAGATCGACCAACCATGTCCACAGTTGTTGTCATGCTGGCAAGTGACACAATGGTCCTTCCAAATCCTAATCATCCTGCGTTTTCAGTTGGAAGAAAGACCAAGGAAGAAGAATCAACATCAAAAACTTCCAAGGATCCTTCTGTTAATGAAGTAACAGTAACAAATATTCTACCCAGGTAG 1965 0.4163 MAKGTLITLPRFLCLMTLFIMASASTQSPNYMDVDCHHSKEQALTLTYQTNLNETLSQLSSDATTGKGYSHTTAGNGTVDAVYGLYDCRGDLTGYFCQFCVFTAASEILQRCPNRSSAVIWYDYCILRYSNHNFIGNLTTTPSWYISESKNITDPEEPQKAEDYMQSLRREATVETNKLYAMGGFNLSHGEERYGLVQCSRDLTNEECSQCLEAMIDEVPQCCRAKLGWQVLAPSCLIKYSDYMFYQITNQTSSPLPNPAKKGGTINSKTLIITIVSVLVAVALLSFSAYYWRYLSNKDSETTPLSFHDHIQRENALNADLPTIPLIWIRQSTNNFSELSKLGEGGFGPVYKGNLEDGTEIAVKRLSKTSGQGLEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMTNSGLDSHLFNQEKRKQLDWKLRLRIINGIAKGLLYLHEDSRLRIIHRDMKASNVLLDQEMNPKISDFGLARTFEKGQSQENTNRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIICGRRNSGFYLSNHGQSLLLYSWRLWCEGKSLELLDPMLEKTYKGSEVMKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMVLPNPNHPAFSVGRKTKEEESTSKTSKDPSVNEVTVTNILPR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01868 654 Pfam Domain of unknown function (DUF3403) 609 654 IPR021820 GO:0004674
Cca10g01868 654 Pfam Salt stress response/antifungal 41 131 IPR002902 -
Cca10g01868 654 Pfam Salt stress response/antifungal 160 243 IPR002902 -
Cca10g01868 654 PANTHER PROTEIN KINASE DOMAIN 21 651 - -
Cca10g01868 654 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 651 - -
Cca10g01868 654 Pfam Protein tyrosine and serine/threonine kinase 340 606 IPR001245 GO:0004672|GO:0006468
Cca10g01868 654 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Cca10g01868 654 SMART serkin_6 336 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01868 654 ProSiteProfiles Protein kinase domain profile. 336 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01868 654 MobiDBLite consensus disorder prediction 624 638 - -
Cca10g01868 654 MobiDBLite consensus disorder prediction 639 654 - -
Cca10g01868 654 Gene3D Transferase(Phosphotransferase) domain 1 412 614 - -
Cca10g01868 654 MobiDBLite consensus disorder prediction 618 654 - -
Cca10g01868 654 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Cca10g01868 654 CDD STKc_IRAK 342 607 - -
Cca10g01868 654 Gene3D - 142 245 IPR038408 -
Cca10g01868 654 Gene3D - 30 134 IPR038408 -
Cca10g01868 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Cca10g01868 654 SUPERFAMILY Protein kinase-like (PK-like) 322 625 IPR011009 -
Cca10g01868 654 Gene3D Phosphorylase Kinase; domain 1 298 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01868 Cca-Chr10 35302447 35306485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01868 18 654 Receptor kinase-like Gene Family AT4G05200 43.114 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01868 PK_Tyr_Ser-Thr 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01868 - - ahf:112718031 858.211