Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01861 ATGGCATCGTCATCACATAGTAAATTTCAAGCTTGTCCATCTGAAGCCTCTAGCATTTCCGAAGGTATTTCCCAAAAACTTTGTGTTGAAGAAGAGAAGAATGATGATGAGGTGACATTGAGGGGGAAGGGTGTCAAATCTGTACAAGATCAAACATCCAATTCCAATTCCCACAAGGTGTTGGATTTTGTCAAGCTCTCAAAGGATGAATCCATTTGTGGGTCCAACGTGGAATTAGATTTTTTCAACCCTATAGTGAACATGGGGGGTTCATCTAATTCTTGTAGGGCTAATAACTATGAACCGAGAGACGAGAACAACAATGAGGAAAAAGAAAAATCATCGGAGGCCAAGACTTTTTCTTGCAACTTTTGTAAGAAAGAATTTTCTTCCTCACAAGCTTTGGGAGGACACCAAAATGCTCACAAGCAAGAAAGGGCTCTTGCAAAGCGTCGCCAAGGGATTGATGTTGGTGCCTTTGGGCACCCTCATTATCTTTATTACCCTTATCCCACACACTCTTATTATGGATCCTATAATAGGGCACTAGGAGTTCGAATGGAATCTATGATTCACAAGCCATCATATCCTTCATCCTCACTTGGCTTTAGGTTTGGTCAAGGGTGGTCAAGACAAGAGATGCTAAACCCTTCTCTTGATAGACTGAAGATGGAGGGTTTCCATGCAAATAGTGGGGTAAGGATTTTGGGGAGTGATACAACTTTGAAGACACAAGATGATCATGGTACTAATGGAAACATTTCAACTGTGAGGACACAAGATGGTCATGGCACTATTGGACACATTCCCTTTCTCGGGGAATCTTCTACAAATAATGTTCCTTCAAAATCAAACCCAACACCATTGAGTACCATTGGTGTTGATCATGATCATTCCAAACAAGAAGGAACCTCTAATTCCGATTCTTCTGATGAGATTGATTTATCACTTAAGCTTTAA 960 0.4073 MASSSHSKFQACPSEASSISEGISQKLCVEEEKNDDEVTLRGKGVKSVQDQTSNSNSHKVLDFVKLSKDESICGSNVELDFFNPIVNMGGSSNSCRANNYEPRDENNNEEKEKSSEAKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKRRQGIDVGAFGHPHYLYYPYPTHSYYGSYNRALGVRMESMIHKPSYPSSSLGFRFGQGWSRQEMLNPSLDRLKMEGFHANSGVRILGSDTTLKTQDDHGTNGNISTVRTQDGHGTIGHIPFLGESSTNNVPSKSNPTPLSTIGVDHDHSKQEGTSNSDSSDEIDLSLKL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01861 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Cca10g01861 319 MobiDBLite consensus disorder prediction 295 319 - -
Cca10g01861 319 Gene3D Classic Zinc Finger 100 156 - -
Cca10g01861 319 MobiDBLite consensus disorder prediction 242 319 - -
Cca10g01861 319 Pfam C2H2-type zinc finger 120 144 - -
Cca10g01861 319 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 8 319 - -
Cca10g01861 319 MobiDBLite consensus disorder prediction 242 262 - -
Cca10g01861 319 MobiDBLite consensus disorder prediction 1 21 - -
Cca10g01861 319 PANTHER ZINC FINGER PROTEIN JAGGED 8 319 IPR045320 GO:0003700
Cca10g01861 319 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Cca10g01861 319 SUPERFAMILY beta-beta-alpha zinc fingers 117 147 IPR036236 -
Cca10g01861 319 MobiDBLite consensus disorder prediction 271 294 - -
Cca10g01861 319 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01861 Cca-Chr10 35140898 35141857 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01861 114 230 C2H2 Transcription Factor Family AT5G10970 49.167 3.31e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g01861 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01861 - - ccaj:109807193 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01861 10 35140898 35141857 Cca10g01861 10 35140898 35141857 ECH