Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01860 ATGAGGAAGAAGCTCGACACCCGTTTCCCCGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCATTGGCGGTTCCAGTTTTAGTATCTAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGTACTTATGAAATAACACTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAGCATTGTGTACAAAGTTATAACGTCTTTGACTTTCTGAGAGACATTGTCAGCAGGGTTCCAGACTATGGGCATGGGCATGGGCATGGCCATTCTGAGGCTGGAGCTGATGATCGCACACTTTCAAAGAGAAGGAAAGCTGCTGGTGAGGAGGGCAATGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGCGTGAGTTGGGCCACACTGGCACTACTggtaggggaagaggtcgaggtagaggaagaggccgaggACGTGGGACTCGAACCGTCGAAAGAGATATCTGTCATCAGCAGGTTGAATCTGAGCCCTGCACGTCTATTCAGCACAGTAGCAATGATATTCCTAATACAAGTGTGCCATTAGATAATGGTCCGCAATCCAAGGAGTTACCGAAGGAGAATTTTGCAGTTTCTGAGGAAAGTACTCAATCTTTCCGTAACATTGATTTGAATGCCAACTTAAATGAAAACGAAGACAAAAATGCTAGCACAGCTGTCCAGGCTTCATTGTCTGAGCCCACTGCCATGGAGATTAAACATGAAGAAATTCCAGGCTGGTCTCTATCTGATGCGGACAAGATGGCCATTGACACTATGCAGCTTGCAAACCTTGGTAATCGACTAGAAGAGGATGAGGAAGATTATGACGAGGAAGGGTAA 867 0.4291 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHGHSEAGADDRTLSKRRKAAGEEGNDSDEEAKRSKMRELGHTGTTGRGRGRGRGRGRGRGTRTVERDICHQQVESEPCTSIQHSSNDIPNTSVPLDNGPQSKELPKENFAVSEESTQSFRNIDLNANLNENEDKNASTAVQASLSEPTAMEIKHEEIPGWSLSDADKMAIDTMQLANLGNRLEEDEEDYDEEG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01860 288 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 287 - -
Cca10g01860 288 MobiDBLite consensus disorder prediction 91 196 - -
Cca10g01860 288 MobiDBLite consensus disorder prediction 153 167 - -
Cca10g01860 288 Coils Coil 270 288 - -
Cca10g01860 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cca10g01860 288 MobiDBLite consensus disorder prediction 168 193 - -
Cca10g01860 288 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Cca10g01860 288 PANTHER HISTONE SUPERFAMILY PROTEIN 1 287 - -
Cca10g01860 288 MobiDBLite consensus disorder prediction 91 139 - -
Cca10g01860 288 SUPERFAMILY Histone-fold 4 90 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01860 Cca-Chr10 35131952 35136923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01860 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.515 1.75e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca10g01860 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01860 K21752 - gmx:100810093 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01860 10 35131952 35136923 Cca10g01860 10 35131952 35136923 ECH