Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01859 ATGGCATCATCACGTGGTTTTGAAGGTTGTCCATCCGAAGCCTCTAACATTTCTGCCACCTCTGAAGGCATTTCCCATAAACCTTGTGTTGAAGAAGAGAATAATGTTGAGGTGATAATGAAGGGGAAAAATGCCAAATATGAACAAGATCAAGCTTCAAATTCCAATTCTCGCAAAATATTGGATTTTGTTAAGCTCTCCAAGGATGAACCAATTCATGGGTCCAATGTGGAATTAGATTTTTTCACCCCAACAAAGAGTTCATCTTCTTGCAAGGTTGAAGGGAGATATGAGAACAACAATGAAGAGAAATCATTGGAGGCTAAGACTTTTTCGTGTAACTTTTGTAAGAAAGAGTTTTCTTCTTCACAAGCTTTGGGAGGGCACCAAAATGCCCACAAGAAAGAGCGTGCTCTTGCAAAGCATCGCCAAGAGATTGATGCTAGTGCTTTTGGGAACAGTCATTTTCTTTATTACCCTTATCCCACACACTCTTATTATGGATCCTATAATAAGGCACTTGGAATTCGAATGGAGTCTATGATTCATAAGCAATCATATCCTTCATTTCCACTTGGTTTTAGGTTTGGTCAAGGGTGGTCAAGACAAGAGATGCTAAATCCTTCTCTTGATAGATTGAGGATGGAGGGTTTGGATGGAAATAGTGGAATTAGGGTTCTTGGGAGTGACACAACTTTGAGGAGAAAAGATGATCTTGGTACTATTGGACTCATTCCCTTCCTTGGAGATGTTTCTACCAATATTGCTACCAATTCAAATTCGACTTTGAATAGGCCAACTTTGAGCAACATGGGTGGTGATCATTCCAAGCAAGAAGAAACCTCTTGTTCTGATTCCTCTAGGATTGATTTATCACTCAAGCTTTAG 888 0.3964 MASSRGFEGCPSEASNISATSEGISHKPCVEEENNVEVIMKGKNAKYEQDQASNSNSRKILDFVKLSKDEPIHGSNVELDFFTPTKSSSSCKVEGRYENNNEEKSLEAKTFSCNFCKKEFSSSQALGGHQNAHKKERALAKHRQEIDASAFGNSHFLYYPYPTHSYYGSYNKALGIRMESMIHKQSYPSFPLGFRFGQGWSRQEMLNPSLDRLRMEGLDGNSGIRVLGSDTTLRRKDDLGTIGLIPFLGDVSTNIATNSNSTLNRPTLSNMGGDHSKQEETSCSDSSRIDLSLKL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01859 295 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 7 295 - -
Cca10g01859 295 MobiDBLite consensus disorder prediction 1 25 - -
Cca10g01859 295 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Cca10g01859 295 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
Cca10g01859 295 MobiDBLite consensus disorder prediction 9 23 - -
Cca10g01859 295 MobiDBLite consensus disorder prediction 258 277 - -
Cca10g01859 295 Pfam C2H2-type zinc finger 111 136 - -
Cca10g01859 295 PANTHER ZINC FINGER PROTEIN JAGGED 7 295 IPR045320 GO:0003700
Cca10g01859 295 MobiDBLite consensus disorder prediction 258 286 - -
Cca10g01859 295 Gene3D Classic Zinc Finger 86 155 - -
Cca10g01859 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01859 Cca-Chr10 35087807 35088694 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01859 101 213 C2H2 Transcription Factor Family AT5G10970 47.009 3.09e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g01859 zf-C2H2_6 1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01859 - - gmx:102661483 405.986