Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01858 ATGGCAGAAACTGCAGTGTCTTTTGCCTTGGCAGAAGTGTTCCAATTCCTAAAGGAAGAAACACACCTTCTAAGAGGCATCCACAAAGATTTTTCAGTCATCAAAGATGAACTAGAAAGCATTCAAGCCTTCCTCAAAGATGCAGATAAAAGGGCAGCAGACGAAGCAAACACTGATGATGGAATAAGAACATGGGTGAAGCAAGTGAGAGAAGCATCTTTTCACATAGAAGATGTCATCGATGAATACCTCAGGCTCATTCATCCGCCCCAACTTGGATGTGTGTCTTCAACATGCAAGATTACAAGCCTGATTTCTCGTCATCAGATAGCAACAAAGATTCAGGACATTAAATTGTCACTTTCTGTGATCAAGGAAAGAAGTGAAAGGTACAAGTTTCAAGTTTCACAAGAACAAGGAAGCAGCTTGGAACAGAGTAGATGGCATGATCCTCGAATGCGTTCTCTTTTCATTGAAGAAACTGAAATTGTTGGATTTGAATTCTCAAGAGATGAAATGGTTGATTGGCTGTTGAAGGGCACAAAAGATCCTGCAGTGATTTCAGTGGTAGGGATGGGAGGACTCGGAAAAACCACCCTTGCCAAGCACGTTTTTGATAGTGAAAATGTAAAAAGCCACTTTGATTGTCGTGCTTGCATCACAGTTTCTCAAACATACACTGTGAGAGGGTTATTCATAGACATGATAAAGCAATTTTCTAAGGAGACAAAAGACCCTCTACCACAAATGTTACACGAAATGGATGAGAAGTCACTAATTTCTGAACTGAGGCAATACTTGGAGCATAAAAGGTATTTGATATTCTTTGATGATGTATGGCATGAAGATTTTTGTGACCAAGTTGACTTTGTCATGCCTAAAAACAATAAAAGTAGCAGGATCATAATCACCACTAGATTGATGCAAGTTGCTGAGTTTTTCAAGAAATCCTTTCTTGTCCGAGTTCACAACCTACAACTTTTGCCTCCAGACAAAGCATGGGAACTCTTTTGCAAGAAGGCATTTAGATATGAGCTAGATGGGCAATGTCCTGCAGAGCTTGAAGGTATCTCAAATGAAATTGTTACAAAATGCAAAGGATTGCCTTTGGCGATTGTGGCCATTGGTGGTCTATTTTCAACAAAATCAAAAACTGTGTTTGAATGGCGAAAGGTAAGTCAAAATCTAAACCTCGAGTTGCAGCGTAATGCCCATCTAACTAGTTTGACTAAGATTTTATCTCTTAGTTATGATGACCTCCCTTACTATCTGAAaccatgcattttgtattttggtatctatcctgaagattactccattcatcataacaaattaactcaacaatggatagcagaagggtttgtaaaatctgatgggagaagaactttagagcaaactgcagatgagtacttatccgagttaacttatagaagcctggttcaagtctccacagttagctttgaagggaaagttaaaagttgtcaagtccatgatttattacatgaaatgattgtaagaaaagtgaaggacttaagtttttgccattttctgcaagatgatgaattagccacagttggaatatcaagacgcctatctatagacactagttccaacaaagtgttgaagagaaatatcaacacacacattcgtgctattcatgcttttggaaaaggagtaattgagccttttatgggtcagttatcttcaaagtctagattgaaagtacttgaccttgaaggtatatcgctaaaatatgctcctagtaatttaggaaacctttttcacttaaagtacctaaatctaaggggaactaaagttcgggttcttcctaaatctgttggtatgttgcagaacttggagaccttagatataagagatacgttggttcacgagttgccaagtgaaataaacaagctcaaaaagctgcgccatcttcttgctttccatcgaaactataatgcagagtattctattttgggctatacaagtggtgtggtaatgaaaaaaggtattaaaaacttgacttccctacaaaatctttattatgtggaggtagatcatgggggaatagatctcatccaagagatgagattcttaaggcaattaaggaagtttggattaaggcgtgtcaagagggaatatgggaaagccatatgtggttcagtggtagagatgaaacaccttgaatcacttaatatcactgcaataggtgaggatgaaatcatcgacttgaactctatttcatccataccccaacttcgacgactcaaattgaaattaagattggagaagatgcctaattggatttcaaaacatgactatcttgtttgcataaagctggctttatccaatttgaaagatgacccgttaagatcgctagaaaacttgccaaatttgatgcaactaagtatgggggagaatgcctatgatggtgaaattttgcattttcaaagtggaggattgcctaaattgaagaaactggaactcagaagcttgaatagagtaaattctatcattatagacagaggagccttgctttcgcttgaacatttctcaattaccaaaatgccccatctcaagaaggtatcccctggcatcaaagccttggataaccttaaagttctcgacttccgtgatatgccaactgaatttgttgagagcattggttcagaaaacggacaagatcattggatcatcaatcacattccccttgtAATCATTCGTCATTGGGTAGGTCCAAAAGTCAATGATTTTGAAGTCCGCACAATTCACTCCTCCAACAAGTCATAA 2790 0.191 MAETAVSFALAEVFQFLKEETHLLRGIHKDFSVIKDELESIQAFLKDADKRAADEANTDDGIRTWVKQVREASFHIEDVIDEYLRLIHPPQLGCVSSTCKITSLISRHQIATKIQDIKLSLSVIKERSERYKFQVSQEQGSSLEQSRWHDPRMRSLFIEETEIVGFEFSRDEMVDWLLKGTKDPAVISVVGMGGLGKTTLAKHVFDSENVKSHFDCRACITVSQTYTVRGLFIDMIKQFSKETKDPLPQMLHEMDEKSLISELRQYLEHKRYLIFFDDVWHEDFCDQVDFVMPKNNKSSRIIITTRLMQVAEFFKKSFLVRVHNLQLLPPDKAWELFCKKAFRYELDGQCPAELEGISNEIVTKCKGLPLAIVAIGGLFSTKSKTVFEWRKVSQNLNLELQRNAHLTSLTKILSLSYDDLPYYLKPCILYFGIYPEDYSIHHNKLTQQWIAEGFVKSDGRRTLEQTADEYLSELTYRSLVQVSTVSFEGKVKSCQVHDLLHEMIVRKVKDLSFCHFLQDDELATVGISRRLSIDTSSNKVLKRNINTHIRAIHAFGKGVIEPFMGQLSSKSRLKVLDLEGISLKYAPSNLGNLFHLKYLNLRGTKVRVLPKSVGMLQNLETLDIRDTLVHELPSEINKLKKLRHLLAFHRNYNAEYSILGYTSGVVMKKGIKNLTSLQNLYYVEVDHGGIDLIQEMRFLRQLRKFGLRRVKREYGKAICGSVVEMKHLESLNITAIGEDEIIDLNSISSIPQLRRLKLKLRLEKMPNWISKHDYLVCIKLALSNLKDDPLRSLENLPNLMQLSMGENAYDGEILHFQSGGLPKLKKLELRSLNRVNSIIIDRGALLSLEHFSITKMPHLKKVSPGIKALDNLKVLDFRDMPTEFVESIGSENGQDHWIINHIPLVIIRHWVGPKVNDFEVRTIHSSNKS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01858 929 SUPERFAMILY L domain-like 496 888 - -
Cca10g01858 929 Gene3D - 150 319 IPR027417 -
Cca10g01858 929 Gene3D - 328 416 IPR042197 -
Cca10g01858 929 PANTHER DISEASE RESISTANCE PROTEIN RP 30 886 IPR044974 GO:0006952
Cca10g01858 929 Pfam Rx N-terminal domain 5 89 IPR041118 -
Cca10g01858 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 431 IPR027417 -
Cca10g01858 929 Gene3D Ribonuclease Inhibitor 538 892 IPR032675 -
Cca10g01858 929 CDD RX-CC_like 2 126 IPR038005 -
Cca10g01858 929 Pfam NB-ARC domain 171 419 IPR002182 GO:0043531
Cca10g01858 929 Gene3D - 417 508 IPR036388 -
Cca10g01858 929 Gene3D - 4 111 - -
Cca10g01858 929 PRINTS Disease resistance protein signature 186 201 - -
Cca10g01858 929 PRINTS Disease resistance protein signature 266 280 - -
Cca10g01858 929 PRINTS Disease resistance protein signature 365 379 - -
Cca10g01858 929 PRINTS Disease resistance protein signature 819 835 - -
Cca10g01858 929 PANTHER - 30 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01858 Cca-Chr10 35060017 35064968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01858 183 376 WRKY Transcription Factor Family AT5G45050 29.146 7.62e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01858 K13457 - gmx:100801561 1493.4