Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01856 ATGGCAGAAACTGCAGTATCCTTTGCCTTGGGAGAAGTGTTCCAATTCCTAAAGGATGAAATAATCCTTCTGAGAGGCATCCATAAAGATTTTTCAGACATCAGAGATGAACTAGAAAGCATTCAAGCCTTCCTCAAAGATGCAGATAAAAGGGCAGCAGACGAAGAAAACGCAAACGATGGAATAAGAACATGGGTGAAGCAGGTCAGAGAAGCATCATTTCGTATAGAAGATATCATTGATGAATACCAAAGGCTCATTCATGTGCTCCAAGTCAAACCACTTGGATGTGGGGCTTTAATGAGCAAGATTACAAGCCTGATTTCTCGTCATCAAATAACAACTGAGATTCAGGACATTAAACAGTCACTTTCTGTAATCAAGGAAAGAAGTGAAAGGTACAAGTTTCAAGTTTCACAAGAGACATCTAGCAGATTTGAAGAAAGAAGATGGCATGATCCTCGAATAGGTTCCCTTTTCATTGAAGAAACTGAAATTGTAGGATTTGAAGACTCAAGAATGGAAATGGTTGATTGGCTGGTGAAGGGCACAAAAGATCCTGCAGTGATATCAGTGGTAGGCATGGGAGGACTTGGAAAAACCACTCTTGCCAAGCACGTTTTTGATAGTGAAAAGGTAAAAAATCACTTTGATTGTCGTGCTTTCATCACAGTTTCTCAATCATACAATGTGAGAGGGATATTCATAGACATGATAAAGCAATTTTGTAGGGAGACAAAAGACCCTGTTCCAAAAACGTTAGAGGAAATGAATGAGACGCCACTAATTTCTGAATTGAGGCAATACTTGGAGCATAAAAGGTATTTGATATTCTTTGATGATATATGGCAGGAAAAATTTTGTCACCAAGTTGAATTTGCCATGCCTAAAAACACTAAAAGTAGCAGGATCATAATCACCACTAGAATGATGCATGTTGCTCAGTGTTTCAAGAAATCCTTTCTAGTTCATGTTCATGAGCTAAAACTATTGCCTCAATGCGAAGCATGGGAACTCTTTTGCAAAAAAGCATTTAGATTTGAGTTAGATGGGCAATGTCCTGCAGAGCTTAAAGGTATCTCGGAAGAAATTGTTACAAAATGCGGGGGGTTACCTTTGGCAATTGTGGCCATTGGTGGTCTATTTTCAACAAAATCTAAAACTGTGTTTGAATGGCGAAAGGTGAGTCAAATTCTGAACCTTGAGTTGCAGCGTAATGTCAATCTAGCTAGTTTGACTGAGATTTTATCTCTTAGTTATGATGACCTGCCTTACTATTTGAAaccatgcattttgtattttgTCATAAACACTTTGATGAGTAATATGAAGATTATTGTGGGTGCTGCTTTTCAAACCTTGTAA 1365 0.3773 MAETAVSFALGEVFQFLKDEIILLRGIHKDFSDIRDELESIQAFLKDADKRAADEENANDGIRTWVKQVREASFRIEDIIDEYQRLIHVLQVKPLGCGALMSKITSLISRHQITTEIQDIKQSLSVIKERSERYKFQVSQETSSRFEERRWHDPRIGSLFIEETEIVGFEDSRMEMVDWLVKGTKDPAVISVVGMGGLGKTTLAKHVFDSEKVKNHFDCRAFITVSQSYNVRGIFIDMIKQFCRETKDPVPKTLEEMNETPLISELRQYLEHKRYLIFFDDIWQEKFCHQVEFAMPKNTKSSRIIITTRMMHVAQCFKKSFLVHVHELKLLPQCEAWELFCKKAFRFELDGQCPAELKGISEEIVTKCGGLPLAIVAIGGLFSTKSKTVFEWRKVSQILNLELQRNVNLASLTEILSLSYDDLPYYLKPCILYFVINTLMSNMKIIVGAAFQTL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01856 454 Gene3D - 157 323 IPR027417 -
Cca10g01856 454 PANTHER DISEASE RESISTANCE PROTEIN RP 30 436 IPR044974 GO:0006952
Cca10g01856 454 PANTHER - 30 436 - -
Cca10g01856 454 PRINTS Disease resistance protein signature 269 283 - -
Cca10g01856 454 PRINTS Disease resistance protein signature 189 204 - -
Cca10g01856 454 PRINTS Disease resistance protein signature 368 382 - -
Cca10g01856 454 CDD RX-CC_like 2 129 IPR038005 -
Cca10g01856 454 Gene3D - 4 118 - -
Cca10g01856 454 Pfam Rx N-terminal domain 5 88 IPR041118 -
Cca10g01856 454 Pfam NB-ARC domain 175 422 IPR002182 GO:0043531
Cca10g01856 454 Gene3D - 331 424 IPR042197 -
Cca10g01856 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 434 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01856 Cca-Chr10 35036131 35039242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01856 165 379 WRKY Transcription Factor Family AT5G45050 27.727 1.25e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01856 K13457 - gmx:100801561 666.766