Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01854 ATGAAAGTTGCAGACTTCATCACAGATAAAATAGAAAACATCAGAACCAAAGGAGGTATTGATTCTAGATTGGTTTCTCAGCATTTGGCTTTCACAATAATGGGAGCTACGTTCTTTGGAGATGGTTTCTTAGCCTCACCAAAGGCTGCAATATATGAGGAACTGTTTATGATGATTGCTAAAGATGCTTGCTTTTGGGCCTCCTTTAATGTTACTCCTTTTTGGAGACTTGGATTTTGGAGGTATCAAAGCTTATGCAGAAAATTAAAATGCTTAACTGAAGATATCCTTCAACATTGCAGAAAAGGTTGCAAATTATTTGGCCATACTGACCAAGATGTACATAATGAAAGTTCCAACAAAGAAATGAAGTCAGCACATGGTGCACAATGTTGTTCTGATGATGGGTTTCAAGATTACTATTTCTTTCGTGACCTTAAGGATCATCAAAATGGTAAAGAAGAACCTAGTGGAAACGTCTTGCGTATGGTGTTTCATGGATGTCAAACTACATCTGCTTTAATCACCAATGTATTGACTAGGCTTGTCATTCATCTGGAAATACAGGATAAGGTTTATTCGGAGATTAGCATGGTAGGAAGAAACCCGTCAAAATATGAGCATGAAGATGTTTATAGGATGCCTTTGTTATTGGCTACAATTTACGAGTCAGCACGCCTTCTTCCCACTGGTCCCATGCTGCAGAGGTGTTCTTTGAAACATGACTTGAGCTTTGCAACTGGTGTAACCATACCTGCTGGAGCTGTACTCGTTGCACCCGTCGAATTGATACAGAAGGATGACTCCAGTTGGGGGAGTGATGCAAGTGATTTTAATCCTTACCGATTTCTCTCCACTGGTACAAAGGGATCAGGTTCTGCTGAAGAAGAACTTGAAGACTTCTCCAGTGCAGGTTTTGTACTGAATGATCCAAATGAAAATGCTGCATTTCTTCCTTTTGGATCTGGTACACGTGCTTGCATTGGACAGAAATATATCATCCAACTTGTTGCCTCATTGTTGGCATCATTACTAAAAAAATATAAGATACGGCTTAACACAGAATCAGATAATGACTCAAACACAACCTTGAAGAATAATCTTCTTCGGCATCATCTCAATTCACATATATTATTTGTGAGAAGGGATCAGTGA 1155 0.3905 MKVADFITDKIENIRTKGGIDSRLVSQHLAFTIMGATFFGDGFLASPKAAIYEELFMMIAKDACFWASFNVTPFWRLGFWRYQSLCRKLKCLTEDILQHCRKGCKLFGHTDQDVHNESSNKEMKSAHGAQCCSDDGFQDYYFFRDLKDHQNGKEEPSGNVLRMVFHGCQTTSALITNVLTRLVIHLEIQDKVYSEISMVGRNPSKYEHEDVYRMPLLLATIYESARLLPTGPMLQRCSLKHDLSFATGVTIPAGAVLVAPVELIQKDDSSWGSDASDFNPYRFLSTGTKGSGSAEEELEDFSSAGFVLNDPNENAAFLPFGSGTRACIGQKYIIQLVASLLASLLKKYKIRLNTESDNDSNTTLKNNLLRHHLNSHILFVRRDQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01854 384 Pfam Cytochrome P450 4 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca10g01854 384 PRINTS E-class P450 group IV signature 311 327 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca10g01854 384 PRINTS E-class P450 group IV signature 214 230 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca10g01854 384 PRINTS E-class P450 group IV signature 266 284 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca10g01854 384 PRINTS E-class P450 group IV signature 327 345 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca10g01854 384 Gene3D Cytochrome P450 1 379 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca10g01854 384 SUPERFAMILY Cytochrome P450 3 382 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca10g01854 384 PANTHER CYTOCHROME P450 FAMILY 4 6 360 - -
Cca10g01854 384 PANTHER CYTOCHROME P450 4C3-RELATED 6 360 - -
Cca10g01854 384 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 320 329 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01854 Cca-Chr10 34987958 34994138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01854 97 349 Cytochrome P450 AT1G74110 28.626 3.78e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01854 - - gmx:100809563 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01854 10 34987958 34994138 Cca10g01854 10 34987958 34994138 ECH