Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01852 ATGGGTTCATTGAGCAAGTCAAATCCAAATCCAAATCCATGGACCCCAAAAGATTGTTCCTCAGGAATCTGCAGCATCTACTGTCCGGAGTGGTGCTACGTAGTGTACCCTCCACCCCCTCCCTCTCTCTTCCTCACCCAAACGCAACGCCACTCTTCGCCCTTCCAATTCTCCCCTCTCGTCGTCGCCCTCATCGGAATCCTCGCCACCGCCCTCATCCTCCTCACCTACTACACCCTCGTCTCAAGGCTCTGCCGCCACACCGCAGCCCCCAGGGAGCCCCCGCAGGGGAACACACCCCAAGGGTTGGACCACTCTCTGATCGAGTCCATCACCGTTCGCAAGTACTCCAAGGGCGGTGGGGCCCACGCTCGCGACTGCTCCGTCTGCCTGAGCGACTTCCAGGAGGAGGAGAGGGTGCGAGTGTTGCCGCGCTGCAACCACGCTTTCCACCTCCCCTGCATTGACACCTGGCTCCACTCCAACGCCACCTGTCCCTTGTGCCGTTCCTCTGTCATTCTCGTCTCCACACGTGCGCCTTCTGCTTCTGCTTCTGCTTGTTGA 564 0.5975 MGSLSKSNPNPNPWTPKDCSSGICSIYCPEWCYVVYPPPPPSLFLTQTQRHSSPFQFSPLVVALIGILATALILLTYYTLVSRLCRHTAAPREPPQGNTPQGLDHSLIESITVRKYSKGGGAHARDCSVCLSDFQEEERVRVLPRCNHAFHLPCIDTWLHSNATCPLCRSSVILVSTRAPSASASAC 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01852 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 181 IPR044675 -
Cca10g01852 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 173 IPR013083 -
Cca10g01852 187 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 11 181 - -
Cca10g01852 187 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Cca10g01852 187 Pfam Ring finger domain 126 169 IPR001841 -
Cca10g01852 187 SMART ring_2 127 168 IPR001841 -
Cca10g01852 187 CDD mRING-H2-C3H2C2D_ZSWM2 127 169 - -
Cca10g01852 187 SUPERFAMILY RING/U-box 109 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01852 Cca-Chr10 34841367 34842257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01852 7 176 C3H Transcription Factor Family AT3G03550 46.635 2.30e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01852 - - ccaj:109810294 379.407