Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01851 ATGCCTCCCAGGAAGAAGAAGCCCAATCTACAGCCTTCCAAGTTCGGCATTCAGCACTTCTTCGATCGCGCTTCTCAGAAGCACTcgcagtcccagccgcagccaccacccaccgccgccaccgccaccgccaccaccgccaccagcaATGCAGAAGCAGAACCCAACGACGTGTCTCCGCAGACGCGCTTCAAATTCTCACCTGGAATGTTGGTGCGGCAGAGCCAGGACGACGGCGCCGACGAGGTCACGTGGAAGATATCTCCCGTCAACGAGAGGCTCCAAGCGGTGTCGAAGCACACGCCGGAAGTCATTCAAGCCTTGGCGGCGGGCTCTTCCAAATTCAAATTTTCCCCAATTCGCACCGACAAGGAGACTTGTCTCAATAGGGTTACTTCGCCCATTCCCAAGGTGCCATTGAGCTTCAAAAGGAGAAAGCCAGCCCCCGATGATGTGAGTGGACAGAGTCCCTTCAGAACTCCGCCGTCCTTGTCTTGTCGCCCTGACAAGGTGCAGCTTGCCAAGGATGTTGAACGTAGCGGACCGGGTGACCAGCTTTTTTTAAGACAGAACAAGAAGGCGTTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGGTGATGATGATGATTCAGTTTCTAATAACAACACTTATTCCTTCAAACCTCAAGATCAAATTGCAAATGAGCTCCCTGTCAGAGTCAACCCTGCAGTAGAAAGGACCACATCACATATACCTAAAGAGGTCTTTGATGTCTCGTCCAATTCTAATTATTTGGTGTTGGAGGTATCTGAAAAACATAGGTCTGCTGATTCATTTGGTGCTCAATGCTCATACAAGGTGCTTCGTTTGCTAAACGAACAAACTGGGGAAGAGAGGGCTGTAAACTTACAGGATGAGTGGTCTTATAGTGTAATTGCACCTGGAGATACTGTGCACATAATTGGTCAATTCGATGAAGGGGGAAATTGTGATATTGGTCATGATAATAACTTTTTGATTGTACAGCCAGATATTCTAGTGTCTGGAACACGGGTTGCTGGCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATACAATGATTACTCAATTGCGGCATTAACGGGAACCATGCTGCACCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACGGTAAATTTCATGGAAGATTATGCCGAAGTGGTGTTAAAGAGAAACGTTGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATGTTCGCAAAACCTTGAGTGATGCTATCCCTAGAATATTAAGTTGGATCATGCAGTTCAAAAATATTGAGGAAAGAGAAGATCCCAGTGTCAATTTTGGATTTGATGATGGGCCAAAGAATGTTAGCATATCTGAGGTAATTGATATTGAAGAGATGGCATGGACTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTCAGAGTGAAAATTCAATCACAAACAGATGAACCGCAGGAAAAGATCATGCCAATAGAGTTCAAAACCGGAAAAACACCTAACAACCAGTCATCAGTAGAACACAGAGCCCAAGTAATGTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAAACTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGATCTGACACAGGGCATTGAGGTTCAAAGATCTGACTTAACTGGGCTATTAATGCGACGGAATGAACTAGCAAGTGATATTCTTAAGGCATTAATTTTGCAACAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTGTGTAGCATTTATCATAAGGCACATGGTGGAAGCACTGGGAGCAGTGGATTGGGAGAAGTTTTTGATTCTCTTACCAACCACATGACATCTTCGCATTCTAAGTTCCTCAGCCATTGGGATCGTTTGATTGACTTAGAAGCTAAAGAAACTGAGCTTTTAAAGAAAGAGGTGTGGCAATCACAAAGTTTAAAAAGTCCAAACGGTGGTGGCCTTTCTTCTATTGTTCTTGATGCTTCACAAAGAATACCTCCTCAGAAATCCCTTAAAGATAATCATTTCATTTATCGTTTTGTACAACAAGATTCTACCTCCAGCCTTTCTGAAATATCTGATGCCTCTTCTAGTGCCTCGTTGAAAAATGATTTAGATTTCACACTTCGAAGTGGGGATCATGTGATACTGAGTAATCAATCTACCCATCAAATGATTGCAAAAGGGGTGATATCTGATATTAGTCCGATCCATGTATCTGTTTCCTTTTCTAAGCGTTTACGAATTCCTGGGAGTTCTTCCACTGCACATGATCTTATTCAGCAGGTTTGGAGAATTGTAAAGGACGAAGCTGTGACTTCATTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCGAAGTGCTCATCTGCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACACTGGATCTGTACTTAGCCAGGATCCAGCAATATCCTATGTTTGGTCAGAGAAGAGTTTGAATGATGACCAACGTAGAGCAATTGTTAAGATACTTACGGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACATCCACATTGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGGGCATCCATTTTGCTAACTGCCTATACAAATTCTGCTGTTGATAATTTGCTCATCAAATTAAAAGCACAGGGGATTGATTTTATACGAATTGGAAGGCATGAAGTAGTGAATGAAGAGGTCAGAGGACACTGCCTTTCAGCAACGAATGTACAAGGTGTTGAAGATATCAAAATAAGGTTGGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTGGGCATTTGTAGTCCCTTGCTTGCCAATGTGAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTTTCTTTGGGCCCTCTAACACTTGCTTCGAGGTTTGTACTTGTTGGGGATCATTATCAATTGCCACCAATTGTCCAGAGTGCAGAGGCCCGAGAGAATGGCATGGGGATAAGTTTGTTCTGTAGTCTCTCAGAAGCACATCCACAGGCTATTTTAGCTTTACAGAGTCAGTATCGTATGTGTCAGGGCATTATGGACCTTTCAAATGCATTGATATATGGTGACAGATTGAGGTGTGGTTCATTTGAGGTAGCTAATGCAAAACTTGAGTTTTCAGGCTTAAGCTGTGGTTTGCCTTGGCTAGAAGATGTTTTGAATCCTCGAAGACCTGTGATATTTATTGATACTGACAATTTGCCTGCTTTAGAGGCAAGAGATCAGAAGGCTGTAAATAACCCTATTGAAGCTCACATAATTGCCGAGGTTGCAAAGGAATTGGTAAAAAATGGAATCGGAACAGAACGCATTGGCGTTATTACTCCCTATAATTTACAGGCAAACCTCATCCGGCATGCTGCTTGCATGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGTATATTGGTATCTTTTGTAAGGTCTAGCGAAAACCCGACAAGCTGTGCTGCTTCCCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACACGTGCTAAGAGAAAGTTGATCATGGTAGGTTCTCGGAGAACTCTATCAAAGGTTCCTCTACTGAAACTTCTTGTTAAGAAGGTTGAGGAGCAATCTGGAATTTTAAGTGTGTCTAAGAAGGATATCTATCGAAAAGGTGAGCTCAAGAGATGTTCCCAAATTAGATGA 3810 0.4165 MPPRKKKPNLQPSKFGIQHFFDRASQKHSQSQPQPPPTAATATATTATSNAEAEPNDVSPQTRFKFSPGMLVRQSQDDGADEVTWKISPVNERLQAVSKHTPEVIQALAAGSSKFKFSPIRTDKETCLNRVTSPIPKVPLSFKRRKPAPDDVSGQSPFRTPPSLSCRPDKVQLAKDVERSGPGDQLFLRQNKKALLELLDQVEDAIGDDDDSVSNNNTYSFKPQDQIANELPVRVNPAVERTTSHIPKEVFDVSSNSNYLVLEVSEKHRSADSFGAQCSYKVLRLLNEQTGEERAVNLQDEWSYSVIAPGDTVHIIGQFDEGGNCDIGHDNNFLIVQPDILVSGTRVAGSFSCPRRTVLDERLKYNDYSIAALTGTMLHQIFQAGLTNDNPTVNFMEDYAEVVLKRNVESLYACGVNENDVRKTLSDAIPRILSWIMQFKNIEEREDPSVNFGFDDGPKNVSISEVIDIEEMAWTPKYGLKGMIDASVRVKIQSQTDEPQEKIMPIEFKTGKTPNNQSSVEHRAQVMLYTLLMSERYQKTVDSGLLYYLQSDLTQGIEVQRSDLTGLLMRRNELASDILKALILQQLPPMLQSPSICRGCRHLNVCSIYHKAHGGSTGSSGLGEVFDSLTNHMTSSHSKFLSHWDRLIDLEAKETELLKKEVWQSQSLKSPNGGGLSSIVLDASQRIPPQKSLKDNHFIYRFVQQDSTSSLSEISDASSSASLKNDLDFTLRSGDHVILSNQSTHQMIAKGVISDISPIHVSVSFSKRLRIPGSSSTAHDLIQQVWRIVKDEAVTSFAIMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDTGSVLSQDPAISYVWSEKSLNDDQRRAIVKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGASILLTAYTNSAVDNLLIKLKAQGIDFIRIGRHEVVNEEVRGHCLSATNVQGVEDIKIRLEQVKVVAVTCLGICSPLLANVRFDVCIMDEAGQTTLPVSLGPLTLASRFVLVGDHYQLPPIVQSAEARENGMGISLFCSLSEAHPQAILALQSQYRMCQGIMDLSNALIYGDRLRCGSFEVANAKLEFSGLSCGLPWLEDVLNPRRPVIFIDTDNLPALEARDQKAVNNPIEAHIIAEVAKELVKNGIGTERIGVITPYNLQANLIRHAACMTSLEIHTIDKYQGRDKDCILVSFVRSSENPTSCAASLLGDWHRINVALTRAKRKLIMVGSRRTLSKVPLLKLLVKKVEEQSGILSVSKKDIYRKGELKRCSQIR 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01851 1269 CDD DEXXQc_DNA2 849 1049 - -
Cca10g01851 1269 MobiDBLite consensus disorder prediction 23 63 - -
Cca10g01851 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 143 1244 IPR045055 -
Cca10g01851 1269 Pfam AAA domain 953 1017 IPR041677 GO:0004386
Cca10g01851 1269 Pfam AAA domain 850 940 IPR041677 GO:0004386
Cca10g01851 1269 Pfam Domain of unknown function DUF83 498 607 IPR022765 -
Cca10g01851 1269 MobiDBLite consensus disorder prediction 139 167 - -
Cca10g01851 1269 Pfam AAA domain 1027 1226 IPR041679 -
Cca10g01851 1269 Gene3D - 780 1047 IPR027417 -
Cca10g01851 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1233 IPR027417 -
Cca10g01851 1269 MobiDBLite consensus disorder prediction 1 83 - -
Cca10g01851 1269 Gene3D - 343 607 IPR011604 -
Cca10g01851 1269 CDD SF1_C_Upf1 1050 1243 IPR041679 -
Cca10g01851 1269 Gene3D - 1048 1256 IPR027417 -
Cca10g01851 1269 Pfam DNA replication factor Dna2 288 490 IPR014808 -
Cca10g01851 1269 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 143 1244 IPR026851 GO:0017108|GO:0017116|GO:0033567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01851 Cca-Chr10 34807074 34827232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01851 1 991 Core DNA Replication Machinery Family AT1G08840 53.700 0.0 1057
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01851 K10742 - gmx:100799415 2027.68