Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01847 ATGTATTTTGTAACCAACAAGTTTGGTTCTAACATGGCTAAGATGCTGTGTGGAGGAGCTTCATGTTCTTCTGCTTTTGGCCGTGGGTggacatatgatgtgttcttgagtttcagaggtgaagacacaaggagaagcttcacagggtctctgtatcatggtttgcgccaaaggggtatcaatgttttcatagatgatgagaagcttaggagaggggaagagatatcccctgctcttgttggagccattgaggggtctaggattgccatcattgtgttctctcacaactatgcatcctccacttggtgtcttgatgaacttgcaaagatccttgagtgttacagaacaagggggcaacttgtttggccggtcttcttccacgtggacccttctgtggtgcgccatcagagaggaagctttgggactgcaatggctaagcatggagacagattcaagggtgatgtagaaaagttgcaaaagtggaagagggccttgtttgaggctgccaatttgtcaggttggaccttagaaaatggGTATGAATTTGAGCTTATCCAAGAGATCATTGAGGAGGCCTCTAGAAAATTGAATCACACCATTttgcatattgctgaatacccagttggaatagagactcgcatatcagaagtgaagtcacttttgcatattgaacctggtgaagatattcgtgtcattggaatatatggactcggaggcataggcaaaacaacaacagtgagggccttatacaacttgattgctggccagtttgaggctacaagtttccttgctgacataagagaaagttcaaatcaaagacaaggcttagtgcaacttcaagaagcacttctttatgatacagtcggagacaagaacataaagctgggaagtatttataaaggaatccctattataaagaaaaggctatgttgcaaaagagtacttttgattcttgatgatgttgacaagttggaacagcttcaagcactagcaggaggacgcgattggtttggtttcggaagtgtgatcattataacaacaagagataagcacttgctagctgctcatcaggttgagaaaacatatgaagtaaagaaattaaaccatgatgaagcttttgaactgttcacttggagtgccttcaaaaggaaggcacctgatgcaggctatttggagatttctaaccgtgtggtgctctatgctgaggggcttccattggccttgaaagtaatgggttctaatttgtttggtaaaacagtggaagagtggaaatctgcactaggaaagtatgaaaagattcccaacaaagaggttcagaatgtacttagagtaacctatgataatctagaggagaatgagaaggaaattttccttgatatagcatgttttttcaaaggggagacaattgaatatgtagaaaagacgctgcaagcttgcggtttctatccaaagtttggcattagtgtacttattgatagatctcttgttagtattgatgaatacaacagattgaaaatgcatgatctgatacaagacatgggtagggaaattgttagagaagtttcaccattagagcctggtaagaggagtagactgtggtaccatgaagatgtttttgaagtactctctgaaaaaacgGGGACTTACAGAATTCAAGGCATGATGGTGGACCTCCCTGATCAATATATGGTACACTTGAAAGATGATTCCTTCAAAAAGATGAAAAATCTTAAAATTCTTATAGTTCGAAATGGACAATTTTTTGGAAGCCCCCAACATCTTCCAAACAATTTAAGGTTGCTTGACTGGATGGAATATCCTTCATCATCTTTACCATCTAATTTTCAACCAAAGAAACTTGTTGTACTCAACTTGTCACGCAGTCGTTTTACAATGCAAGAGCCATTCAAGTATTTTGATTCGTTGACTTCTATGGACTTGAGTTACTGTGAATTGTTGACAAAACTTCCTGACGTATCCAGAGTCCCAAATTTAACAGAACTAAATCTTGATTATTGTACAAATTTAGAAGAGGTTCATGACTCTGTTGGATTCCTTGACAAACTTGTTGAGTTGAGAGCTTATGGATGCACCAAGCTTAAGGTTTTTCCAAGTGCCATCAGGTTGACATCACTGAGAAATCTTTTCCTTAATTGGTGCTCAAGCCTTCAAAATTTCCCAGCTATTTTGGGGAAAATGGATAACCTCATATCCATTTCTCTAGAAAGCAGTGGTATAGAAGAATTGCCTCCTTCCATTGGAAGTCTTGTTGGACTTCAAGAACTTAGCATGACATCTTGCTTAAGCCTCAAGGAACTGCCTGACAACATTGATATGTTGCAAAATCTTAGAAACCTTGATATTGAAGGCTGTCCACAACTTCGAAGTTTTCTAGCAAAGTTGAGAGACATGGGAGACTCTACCCCTACCTTTGGTAACATTCAGTCACTGAATCTAGAAAACTGTGGCCTCATAGATGAAGATCTTCCAATAATTTTCTATTGCTTCCCAAATATGGCATCATTAGTCCTTTCAGCAAATAATTTTGTAGCTCTTCCAAGCTGCATACAAGAATTTGCTTTCATGGAATTACTTCACTTGGACAACTGCAAAAAACTCCAAGAAATTCGGGGTATTCCTCCTAACTCACAGTACATTAATGCTAGAAATTGCACATCATTGACTTCAGAGTCATCAAACTTATTACTGAGCCAGGAGACTTTTGACGCATGTGAATTACAAGTTATGGTGCCTGGAACAAGGGTTCCAGAATGGTTTGCTCACATCACCAAAGGTGAATATGTGACATTTTGGGTACGTGAAAAGTTTCCAGAAATTATCTTTTGCTTTGCTCTTGCGGTAGAGAGTGAAATGAAGGAAAGTTTCGATTGCGAAATCCGGTTTTATATAAATGGTGATGAAGTTTATGAATTGGAAATACCAAGGTGCTTTTCAGATATGATGACAGATCATTTGTGGCTGTATGACTTAAGAACTAATCCATCCATCCAGTGGCATAGTCTTGATTTATATCTAATGAATGACTGGAATCAGATTGAGATTTCATGTGAGAAGATAAGTGGAGCATCAAATGTGACTGTGAGTTGGTGTGGAGTTCATGTGTGTAAGCAAGAAGCTAACATGAAGGATATTTTATTTACAGATCCTAATCTAGATTTAGATCCAAGCAGACACGCTGAGAATATTGGTACAGATTTGGATACAAACAGTGAAGAAAGCACAAAGTCAATTGAAGATTCCCAATTTTTCATGAGAGTAGATGATAACTGCTACAATTTGAATAACTTGGAAGGTTGTGTGACACCGGATAGGCAAGTGAAGGAGTGGTGGAAAATAAGTGAAGACACAGAAAGTAATGTATCTGCATGCCACACTGACATGGATCAGAGCCAAGAAAAGAATTTATTGCATGAAAAACCATTGGATGGTGTTATTAAAGATTCAATTGCTTCATTGTATCTTGGAGACAATGCTAGTGTCAAAGCTTCTAAATCAAACATACTGGCTGCTGATCATCCAGTGAAAACTCAACCACAATCCCAGGTCACAAGTTTTAGACTGATACCAAATGTTCATGCACCAAGGGCTACTGTATCCTTGGACAAAGTTACTAGAGGGGAGCCACCTCAAAATACCAACTCCACCATGGTGCTGCCAACAACCCTTGACTTGAGAAATCAAACCAATTTGATTATAAATGATACAGACATGGAAGCATTTTATGCTGTTCTGGAGGCTGAAACCTCTATGGTTTCACTTAGCAATGACTCTAGAATTTTTTCTGAATTGACCAACAAAATGCCAAGTGAAGAGACCAAGAAAGCATTGAAGACACTCCAGGACTTCGTCACCAAAGACTTTTTAGTCTTGTTGGGCCCTAGTGAGTACAGAACCATGAAAGATACCTTAGACTACCTCACCAATTTACCAGCAGAAGATGGCATATCAGTGGAAATGAGATCATTGATAATACAAGTTTCAAGACAGTTCACTCATTGGAGTTGGGATTACACATGTGAAAGCAAGAAAATAGAATCTACCACAGCCAAGTTGTTGAAAGCTGATGAACTAGAAGAGGGTCTTGAAGCTAATAAGAGCCACTTCAAGGAAGTCATGTGCTTAGAAAATGAGTTGTGCAGTGAATTGGCCTATTTGGAGGAAAGAAAGAAGGAGCTAGAAGAGCAAATAAATGCTGTTAAAGCTAACATATCTGCTTCACAAGCAGCTAGGAACATGGCTACTCAAAGAAAGAGAGAAATCTTTGGGGAAGCAAAAATTCTAAAAGCTCAAAGAGATGAGTTAAGGGAACAAGTGCCACACTTGAGAGATGAGCAGGAATTGGCAAAGCAAATTCAGGCAAATATCAGAGATGAATGGTCAAAGCTTGGAGAAAAATTTAACATCAGCTTAAGGCACGAAGAGTTTGATTGA 4452 0.2565 MYFVTNKFGSNMAKMLCGGASCSSAFGRGWTYDVFLSFRGEDTRRSFTGSLYHGLRQRGINVFIDDEKLRRGEEISPALVGAIEGSRIAIIVFSHNYASSTWCLDELAKILECYRTRGQLVWPVFFHVDPSVVRHQRGSFGTAMAKHGDRFKGDVEKLQKWKRALFEAANLSGWTLENGYEFELIQEIIEEASRKLNHTILHIAEYPVGIETRISEVKSLLHIEPGEDIRVIGIYGLGGIGKTTTVRALYNLIAGQFEATSFLADIRESSNQRQGLVQLQEALLYDTVGDKNIKLGSIYKGIPIIKKRLCCKRVLLILDDVDKLEQLQALAGGRDWFGFGSVIIITTRDKHLLAAHQVEKTYEVKKLNHDEAFELFTWSAFKRKAPDAGYLEISNRVVLYAEGLPLALKVMGSNLFGKTVEEWKSALGKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDIACFFKGETIEYVEKTLQACGFYPKFGISVLIDRSLVSIDEYNRLKMHDLIQDMGREIVREVSPLEPGKRSRLWYHEDVFEVLSEKTGTYRIQGMMVDLPDQYMVHLKDDSFKKMKNLKILIVRNGQFFGSPQHLPNNLRLLDWMEYPSSSLPSNFQPKKLVVLNLSRSRFTMQEPFKYFDSLTSMDLSYCELLTKLPDVSRVPNLTELNLDYCTNLEEVHDSVGFLDKLVELRAYGCTKLKVFPSAIRLTSLRNLFLNWCSSLQNFPAILGKMDNLISISLESSGIEELPPSIGSLVGLQELSMTSCLSLKELPDNIDMLQNLRNLDIEGCPQLRSFLAKLRDMGDSTPTFGNIQSLNLENCGLIDEDLPIIFYCFPNMASLVLSANNFVALPSCIQEFAFMELLHLDNCKKLQEIRGIPPNSQYINARNCTSLTSESSNLLLSQETFDACELQVMVPGTRVPEWFAHITKGEYVTFWVREKFPEIIFCFALAVESEMKESFDCEIRFYINGDEVYELEIPRCFSDMMTDHLWLYDLRTNPSIQWHSLDLYLMNDWNQIEISCEKISGASNVTVSWCGVHVCKQEANMKDILFTDPNLDLDPSRHAENIGTDLDTNSEESTKSIEDSQFFMRVDDNCYNLNNLEGCVTPDRQVKEWWKISEDTESNVSACHTDMDQSQEKNLLHEKPLDGVIKDSIASLYLGDNASVKASKSNILAADHPVKTQPQSQVTSFRLIPNVHAPRATVSLDKVTRGEPPQNTNSTMVLPTTLDLRNQTNLIINDTDMEAFYAVLEAETSMVSLSNDSRIFSELTNKMPSEETKKALKTLQDFVTKDFLVLLGPSEYRTMKDTLDYLTNLPAEDGISVEMRSLIIQVSRQFTHWSWDYTCESKKIESTTAKLLKADELEEGLEANKSHFKEVMCLENELCSELAYLEERKKELEEQINAVKANISASQAARNMATQRKREIFGEAKILKAQRDELREQVPHLRDEQELAKQIQANIRDEWSKLGEKFNISLRHEEFD 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01847 1483 Gene3D - 26 200 IPR035897 -
Cca10g01847 1483 Gene3D Ribonuclease Inhibitor 725 930 IPR032675 -
Cca10g01847 1483 ProSiteProfiles TIR domain profile. 30 196 IPR000157 GO:0007165
Cca10g01847 1483 Coils Coil 1424 1451 - -
Cca10g01847 1483 Gene3D Ribonuclease Inhibitor 558 724 IPR032675 -
Cca10g01847 1483 Gene3D - 366 450 IPR042197 -
Cca10g01847 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 460 IPR027417 -
Cca10g01847 1483 Gene3D - 201 364 IPR027417 -
Cca10g01847 1483 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 26 1456 - -
Cca10g01847 1483 Coils Coil 1382 1416 - -
Cca10g01847 1483 Pfam TIR domain 32 199 IPR000157 GO:0007165
Cca10g01847 1483 Pfam NB-ARC domain 211 442 IPR002182 GO:0043531
Cca10g01847 1483 SUPERFAMILY L domain-like 505 899 - -
Cca10g01847 1483 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 174 IPR035897 -
Cca10g01847 1483 PRINTS Disease resistance protein signature 231 246 - -
Cca10g01847 1483 PRINTS Disease resistance protein signature 308 322 - -
Cca10g01847 1483 PRINTS Disease resistance protein signature 401 415 - -
Cca10g01847 1483 PRINTS Disease resistance protein signature 778 794 - -
Cca10g01847 1483 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 1456 IPR044974 GO:0006952
Cca10g01847 1483 SMART till_3 31 171 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01847 Cca-Chr10 34639864 34646732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01847 26 804 WRKY Transcription Factor Family AT4G12020 32.509 4.71e-93 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01847 - - ccaj:109810288 2959.47