Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01844 ATGTCCACGGCGGCGCCTCCTTCCGCCGCCGTGACCACCAGCGGCGCCGGCCTCGGGTACGGCATCGCCATCGCTGTCAGCATCCTCGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGCATCAAGGCCAACGCCACTCGCCGCAGCACCACCGCTCACTACGACCAAACGCAAAACGCAAACACCGctgggcctgggcccgggcccgtggcggtggtcctgggcctggAAAAGCCGGCCATCGAGGCCTACCCGAAGATCGTCCTCGGAGAGAGCAGGCGGCTGCCCAGGCCGAACGAAGGCCCGTGCGCCATCTGCCTATCCGAGTACCTTCCCGAGGAGACCCTACGCTGCGTTCCGGACTGCCACCACTGCTTCCACGCCGACTGCGTCGACGAGTGGCTACGGATGAGCGCCACGTGTCCCCTCTGCCGGAGCTCCCCCGCCCCCTCGCCGCTGCCCACGCCGCTCTCCCAACTCGTTCCGCTGGCTTTCCACGCCAGGAAAATTAGAAAGCGAAAGTGTAGGAATTTCATGCATGGCTTCACAATCATTGAATAA 573 0.5899 MSTAAPPSAAVTTSGAGLGYGIAIAVSILVLISTIMLASYACVRIKANATRRSTTAHYDQTQNANTAGPGPGPVAVVLGLEKPAIEAYPKIVLGESRRLPRPNEGPCAICLSEYLPEETLRCVPDCHHCFHADCVDEWLRMSATCPLCRSSPAPSPLPTPLSQLVPLAFHARKIRKRKCRNFMHGFTIIE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01844 190 SUPERFAMILY RING/U-box 102 154 - -
Cca10g01844 190 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 18 155 - -
Cca10g01844 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
Cca10g01844 190 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Cca10g01844 190 CDD RING-H2_PA-TM-RING 107 149 - -
Cca10g01844 190 SMART ring_2 107 148 IPR001841 -
Cca10g01844 190 Pfam Ring finger domain 107 149 IPR001841 -
Cca10g01844 190 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01844 Cca-Chr10 34535397 34537014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01844 1 172 C3H Transcription Factor Family AT5G07040 61.628 2.96e-68 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01844 - - ccaj:109806705 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01844 10 34535397 34537014 Cca10g01844 10 34535397 34537014 ECH