Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01838 ATGGCGTCTTCTTCGAACCCACCATGCGCAGCGTGCAAGTTCTTGCGGAGAAAGTGCCAAGCGGAGTGTGTTTTCGCGCCCTACTTCCCTCCCGACCAGCCTCAGAAGTTTGTGAACGTTCACAGAATCTTCGGAGCCAGCAACGTCTCCAAGCTCCTCAACGAGTTGCATCCTCGTCAGCGCGAGGATGCTGTCAACTCTCTGGCCTACGAAGCCGAGATGCGCCTCCGAGATCCTGTCCAAGGCTGTGTCGGAGTCATCTCGCTTCTTCACCAGCAGCTTCGTCAGCTCCAAATTGATCTTCAAAAGGCCAAGTTTGAGCTGGCGAAGATTCAAAACTTGGGAGTGACCACTAAATATGGTCACTCTACTGCAGTTACCATGACCGTTGGTATTAACGGACATGATAACCGCTATTATGATCAACGACAAAGCTACCTTCAGTGTTTGCCACAACAGTTCGTTAGGAACTTTGATGCAGCAGGGAACAACTATGAGGATAATGTGTTGGCCATGAACATTGCTAGTTTTGGCGCGCAGTTGAGTCAACTTCAGCAGCCTAATGTTGTTGCTCGTGATGACCCTCACACTAGGGTTCATCCCTCTTAG 609 0.5041 MASSSNPPCAACKFLRRKCQAECVFAPYFPPDQPQKFVNVHRIFGASNVSKLLNELHPRQREDAVNSLAYEAEMRLRDPVQGCVGVISLLHQQLRQLQIDLQKAKFELAKIQNLGVTTKYGHSTAVTMTVGINGHDNRYYDQRQSYLQCLPQQFVRNFDAAGNNYEDNVLAMNIASFGAQLSQLQQPNVVARDDPHTRVHPS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01838 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 4 137 - -
Cca10g01838 202 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Cca10g01838 202 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Cca10g01838 202 Coils Coil 87 114 - -
Cca10g01838 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01838 Cca-Chr10 34447235 34448007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01838 2 202 AS2 family AT1G65620 58.621 6.33e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca10g01838 LOB 6.3e-41 No_clan