Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01827 ATGTCTGAGGTTTCTCAATTCCCAGCTGGTCTTAGGGTCCTTGCAATTGATCATGACCCCTCAGTTCTTGAATTCACTAAGCAAATATGTAGTCAACTCAAATATCACGTTGTCACATGCACCGAATCTCCATTTGCTTTGAATCTTGTGAGGGAAATAAAGACTTGCATCGATGTGATACTCATGGAGCTTCACATGCCAAACATGGATGGCCATGAATTCCTTCAACATGCCAAGAAGGATATTCGAATTCCTGTTATCGTGATGTCTGCTGACAATGCTGAGGATTCCGTGACGAAGGCTGTGAGAAATGGGGCTTGTGATTATTGGAATAAGCCTTTGCATGTGAATCAGTTCAGGAACATGTGGATACATGCAGCTAGGAAAGCCTTTAGTGAAAACAAGAATTTTGTCACATTGGAGAATAATAATTCTGAATTTGGTTCTTCTACTGTTATTGAAGCCACAGAAATATTTAGAGACCAAAACAATAGCAGTTCAAGAGAATCCGATGAATCGGAACATTCTTGTCAACCCCCAGCAAAAAAGCCACGTGTAATATGGACACCAACGCTGCATCGTGAATTTCTCAAGGCAGTGAAGCAAATTGGGGATGATAAAGCTGTGCCAAAGAAAATTCTTGAAGTGATGAATATCCCTGGTTTGACAAGAGATCACGTTGCTAGTCATTTGCAGAAATATAAGCGGCATATGAAGAGTACATCTAATGGGGCAACACAGCAACAGAATGAGATGAAGAATACATCTAATGGAGCAACACAGCAACAGAATGAGATGAAGAGTACATCTAATGGAACAACACAGCAACAGAATGAGGTGAAGAGTACATCTAATGAGATGGCATTGCCAAACACAGAATCTGGTGCACTTGTGAGAGTGGACACATTGACAACCCTTGATACAGAAAAAGAGGCTAACCATTCCAATCAAGAACAAGGTTTGACACATTTTCATCCTTCTAACATTGCCATTGTCAACAATTTCTCTCAGCCAATCATGGATCCATCTATATATGGAGTGTTCAAGGATACATTGCAGCAACAGCAGCAGAAGACAATGATGCATCATCAAATTAGTCCTATCAATATTCAGCCATCTTTTGCCACCCAGAATATTAATAATGCTTTAGTATCACATCAAACTATTGATGCAAACAACTTAGGTTTCACAAGTGGTGATATGAGATCTTTGTCTGCACCAGGGTCAGAAGCACTAGTTCCCTATGGTTCACAATCTGgtatcatggggaagaacttgtggcgcgagcttaagcatcgctacaatgtcaccgagcacgtggtccccgagccccaagaggaggatgcttcccccctgagggttaaccgaaaaagaaagaggggagcgaaggaggttggggggacctccgcccctccggatgtcgaggaggtgacctccaaagctgccgatgctggcgcgatggaccttattgagagtccgccgcccatgggggctcctcaggtggccgttgaggagatagctcaggctgttgagcaggttgttcatcctgccgaggtggcaggagaggctgccgaggcggcgactcaggctgctgggcaggccgcccgggttgccgaggtggcgaccccaaccgccgcgcaggtcgcccatgctgctgaggcgaggtcaaagattcctatcaccgaccccccagttgccgagcaggggacgccggcttctgcctctgccgaggctcgtggcaaggggccgagttttgaggtccccgtgtccacccctgcagcttcgacgccaccgtctggttcgtcgtag 1809 0.2797 MSEVSQFPAGLRVLAIDHDPSVLEFTKQICSQLKYHVVTCTESPFALNLVREIKTCIDVILMELHMPNMDGHEFLQHAKKDIRIPVIVMSADNAEDSVTKAVRNGACDYWNKPLHVNQFRNMWIHAARKAFSENKNFVTLENNNSEFGSSTVIEATEIFRDQNNSSSRESDESEHSCQPPAKKPRVIWTPTLHREFLKAVKQIGDDKAVPKKILEVMNIPGLTRDHVASHLQKYKRHMKSTSNGATQQQNEMKNTSNGATQQQNEMKSTSNGTTQQQNEVKSTSNEMALPNTESGALVRVDTLTTLDTEKEANHSNQEQGLTHFHPSNIAIVNNFSQPIMDPSIYGVFKDTLQQQQQKTMMHHQISPINIQPSFATQNINNALVSHQTIDANNLGFTSGDMRSLSAPGSEALVPYGSQSGIMGKNLWRELKHRYNVTEHVVPEPQEEDASPLRVNRKRKRGAKEVGGTSAPPDVEEVTSKAADAGAMDLIESPPPMGAPQVAVEEIAQAVEQVVHPAEVAGEAAEAATQAAGQAARVAEVATPTAAQVAHAAEARSKIPITDPPVAEQGTPASASAEARGKGPSFEVPVSTPAASTPPSGSS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01827 602 Pfam Myb-like DNA-binding domain 188 235 IPR001005 -
Cca10g01827 602 SUPERFAMILY CheY-like 10 142 IPR011006 -
Cca10g01827 602 SUPERFAMILY Homeodomain-like 181 240 IPR009057 -
Cca10g01827 602 MobiDBLite consensus disorder prediction 441 476 - -
Cca10g01827 602 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Cca10g01827 602 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 375 IPR045279 GO:0009736
Cca10g01827 602 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Cca10g01827 602 Gene3D - 11 144 - -
Cca10g01827 602 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 239 IPR017930 -
Cca10g01827 602 CDD REC_typeB_ARR-like 13 127 - -
Cca10g01827 602 MobiDBLite consensus disorder prediction 161 186 - -
Cca10g01827 602 MobiDBLite consensus disorder prediction 552 602 - -
Cca10g01827 602 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 7 375 - -
Cca10g01827 602 Gene3D - 180 240 - -
Cca10g01827 602 MobiDBLite consensus disorder prediction 441 455 - -
Cca10g01827 602 MobiDBLite consensus disorder prediction 164 179 - -
Cca10g01827 602 SMART REC_2 11 123 IPR001789 GO:0000160
Cca10g01827 602 MobiDBLite consensus disorder prediction 232 297 - -
Cca10g01827 602 MobiDBLite consensus disorder prediction 238 297 - -
Cca10g01827 602 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 183 237 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01827 Cca-Chr10 34263079 34268266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01827 1 248 Response Regulator Gene Family AT2G25180 36.782 7.74e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca10g01827 Response_reg 1.2e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01827 - K14491 ccaj:109788215 828.165