Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01824 ATGGCCACCGCAAGAACAGTGAAGGACGTTTCTCCCCACGAGTTCGTCAAGGCTTACTCTGCTCACCTCAAGCGATCTGGCAAGATGGAGTTGCCAGAGTGGACTGATATTGTGAAGACTGCAAGATTTAAGGAATTGGCTCCTTATGATCCTGACTGGTACTACGTTAGAGCTGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGACTTGGTGTTGGTGCATTTCAGAGGATTTATGGTGGGAGCCAGAGGAATGGTAGCCGACCTCCTCATTTCTGTAAGAGCAGTGGTGCCATTGCTCGTCACATTCTTCAACAGTTGCAGAGCATGAACATCATTGAATTGGACACCAAGGGTGGAAGGAAAATTACCTCCAGTGGCCGGCGGGATCTTGACCAAGTGGCTGGACGGATCGTGGTTGCACCTTGA 432 0.4977 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQSMNIIELDTKGGRKITSSGRRDLDQVAGRIVVAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01824 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Cca10g01824 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Cca10g01824 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Cca10g01824 143 Gene3D - 1 142 IPR036388 -
Cca10g01824 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Cca10g01824 143 PANTHER 40S RIBOSOMAL PROTEIN S19-3 3 142 - -
Cca10g01824 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01824 Cca-Chr10 34227110 34229637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01824 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 85.915 6.30e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01824 K02966 - gmx:100499800 286.96