Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01821 ATGGGGCAAGAGCAAATCGATGCTGAAACAGTAGTTGATTTGGGTTTGGAGGCACTCCCGGAGGAAACCGCCACCCTTACTATGCCTGAGCTGGGGCCCCGACCACGCAGAAACTGCCTCTTAAACAACGCAAATCCTAATCCGATCACTGAACCACACTCGCCGCCGCCCGCCGGAGCCCGTCAGAGGAGGACAGCCGTTGTTGCTCCAACAAGAAGGCCAATACTGCACGGCAGGTCCTATTCTGTACAGGTCATGGATATGCTTGGTCCTAGTTTGTGGGATGTTTGGAATAACAACTCACACATGATGTCAACTGAAATGGTTGCATGTATTGCAATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAGAGGGAAAGAAATCCCTAACCCACGAAATCGCCTTCGTCCAGCCACCACCGCCTGCCGTCGCGCCCAACTGCCATCGTCCGTCGTGTCACCGTCAAGCTATCTGATCAGTAATTGTGAACTTGCCATAATCTTTTGGGGTGTAATTCCTCTTCTGGTGAAAGCTGGAACTTGGATCATGTATGGGAGAACAGCTTACCAACTTGTGAAAGAATTTGCAAGTGGAGAAAAGGGCCAGCTTGTGCCATTCAATAGTGACTTGTTTGAACAAGTAGTTGCAGAATGCAGTCAACATCACCTTGAGCTTCAGTCCTTGATAAGGAAGATACAAGATGAAGGTTTGGATGTCCAAACGGCAAGAAATGCAGATCACTATGGAGCCCTTATCCACCATCTTGCTTTAGTCCGAAATAAACGTTGTCTAATGGCCTATGTGTACAATCGAGCTGAAATTATGCGAAGCTTGTTGTGGAAGATAGGGCATGTGCTCCCTCAAGAAATTGAAGAGAAGCTTTGTAATTCGGAGGAAGAATATTTCAAGAAGCATTCTACAGCATTGAAATCTTATATGAAGAAACTGCTGGTTGATCTGACTGTGGATATGGTACCGCCAAAAGATCCTTACATCCAAGTAAGGGTCCTTGATGACATTGGAGAAGGCATTGTGCTTAGTGATAAGACTGCCAATTTTGCCCGCCATTCAATGCACTTTCTTAAGCGAACTGATGCCGAGCCATTTATCTCAAAGGGCCTAATGGAGGAGCTCACCAGTTGA 1149 0.4665 MGQEQIDAETVVDLGLEALPEETATLTMPELGPRPRRNCLLNNANPNPITEPHSPPPAGARQRRTAVVAPTRRPILHGRSYSVQVMDMLGPSLWDVWNNNSHMMSTEMVACIAIEAISILEKMHSRGKEIPNPRNRLRPATTACRRAQLPSSVVSPSSYLISNCELAIIFWGVIPLLVKAGTWIMYGRTAYQLVKEFASGEKGQLVPFNSDLFEQVVAECSQHHLELQSLIRKIQDEGLDVQTARNADHYGALIHHLALVRNKRCLMAYVYNRAEIMRSLLWKIGHVLPQEIEEKLCNSEEEYFKKHSTALKSYMKKLLVDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDKTANFARHSMHFLKRTDAEPFISKGLMEELTS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01821 382 Pfam GINS complex protein 212 300 IPR021151 -
Cca10g01821 382 SUPERFAMILY Protein kinase-like (PK-like) 80 127 IPR011009 -
Cca10g01821 382 PANTHER PARTNER OF SLD5 185 378 IPR005339 GO:0000811|GO:0006260
Cca10g01821 382 Gene3D Transferase(Phosphotransferase) domain 1 72 128 - -
Cca10g01821 382 CDD GINS_A_psf1 187 318 IPR005339 GO:0000811|GO:0006260
Cca10g01821 382 SUPERFAMILY GINS helical bundle-like 185 330 IPR036224 -
Cca10g01821 382 MobiDBLite consensus disorder prediction 28 64 - -
Cca10g01821 382 Gene3D - 185 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01821 Cca-Chr10 34159535 34180576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01821 185 382 Core DNA Replication Machinery Family AT1G80190 72.637 5.24e-108 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01821 K10732 - jre:108984009 329.717