Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01815 ATGGCTCTTGTGGGAGAAGCTTTGCTTTCAGCTGCTGTGGAGGTGCTCTTGGACAGGATCGTTTCCCATGACTTGTTTCGTAGTAAGAAGCCTGACACTTCACTCCTCGAAAAGCTTAGAATAACACTGCTGAGTGTTGAAGCTTTACTCAATGATGCTGAAGAGAAACAATTCACCAACCCTCCAGTCAAGAAATGGCTCCATGCTCTCAAACAAGCTTTCTTTGATGCTGAAGATTTGCTTGATCAAATCAACACTGAGGCTTTGCGATGCAAACTGGAAGCCAACTCTCCGACTCAATCCACTACTCATCAGGTCCTCAACTTCCTTTCTTCTCCTTTCAACAAGTTTCAAAAAGTTATCAATTCTAAAATACAAGACTTGTTTCAAAGATTAGAGCACTTAGCACTGCAAAAAGACATCCTTCAGCTGAAAGAAGGTGTTTCAAGCAGTGTTTGGCATGGAACTCCTACAAGTTCTGTGGTTGATGAATCTACTATTTCTGGCCGAGATGGTGACAGAAAGGAACTTAAGAAATATTTGATGTCTGAGGATGCTGGTGGTTCTAAAATAGGAGTGGTTTCCATAGTGGGCATGGGAGGGCTTGGCAAAACTACACTTGCTAAACTCCTTTACAATGATTTAGATGTACAAGAGAAATTTGATCTGAAAGCATGGGCTTATATTTCAAAGGATTTTGATGTTTGCAGGGTTACTAAAACCATTCTTGAATCTGTCACTTACAAATCCATCGATACAGATAATTTGAATATTTTCCAAGAGAAACTGAAAGAGAGCTTGAGTCATAAAAGATTTTTGATTGTATTGGATGACATATGGGATGGAAGCTATGTTGACTGGAACAATCTAATGGACATTTTTAGGGCTGGAGAAATGGGGAGTAAAATTATCATCACAACACGAGATAAGAGTGTTGCAAAAGCCATGCAAACATATTTGCCTATCTACCGTCTCACACCTCTTCCTAGTGATGATTGTTGGTCTTTACTTTCTAAGCATGCATTTGGAGCAAATAATTGCAGCAAACAATCCAACCTAGAATTAATTGGTAAAGAAATTTCAAAACAATGTGATGGCTTACCATTAGCTGCAGTGGCACTCGGGGGTCTTCTTCGCACCAATTTATCAGAAAATTATTGGAACAAGGTATTAAAAAGTAACGTTTGGGATTTGCCAAATGTTAAGGTGCTACCAGCTCTACTATTGAGCTATCATTATCTTCCTGCTCCTTTAAAACGATGCTTCACTTACCTATCTATATTTCCAAAGAACTATAGGTTAGAAAAAGATATGGTAGTTCGGCTATGGATTGCCGAAGGCTTGGTTTGTCAGTCCAAAAGTGACAAAACTATAGAAGAAATAGGTGATGAATACTTCGATGAACTAGTATCAAGGTCACTAATACATCGAGGGTCACGTTCGGGACAAGCAATCTTTGAAATGCATGACCTCATCAATGATTTAGCCACAATGATTTCATCTTCATATTGTCTCAGGTCTGAGGAACCAATTTCACATGCAAGCTTTGAAAGTGTTCGTCACTTTTCATACAATAAGGGTTTCAATAAATTTGATTTCCCTTATGGATCAAAAGGTCTGCGTACGTTCATAGCATTATCTAATCTTTATGATCTTCATCTATCAAACAAGGTAGTACATGACTTTTTACCAGTAATGAAACAGTTAAGGGTGTTGTCCTGGTCAAGGCATGCCCATATCACTGAATTGCCTGATTCTCTTGGAAATCTAATTTACTTGCGATACTTAGATCTATCTCGCACTAAAATTCAGAAATTGCCAGACGCAACATACAAGCTCTATAATATGCAAACCTTGTTGTTGTCCAATTGTAGGTTACTCACTAAATTGCCCGAGGACATTGGAAATTTAATTTACCTGCGATACTTAGATCTTTCTTACACTAAAATTCAGAGATTGCCAGATGCAACATGCAAACTCTACAATATGCAGACCTTGTTGTTATCCTATTGTCAGTTACTCACTGAATTGCCTGAGGACATTGGAAATTTGGTAAATCTACAACACCTAAACATCAGAGGGACTAATTTGAAGAAGATGCCTATACAAATAGCCACACTACAAAATCTTCATACCCTATCTGACTTTGTCATCAGCAAAACGCCAGATGGATTGACGGTTAGAGAGCTGAAAAACTTCTCCCGTCTACGAGGACAACTTTCCATTTTAAAGTTACAAAATGTTACTGACCCCTCTGAAGCTGCCCAAGCCAATTTGAAGAAGAAAGATCAAATAGATTCTTTAGCATTAGAATGGGATTGCGGTATGACTGAAAACACGCAAATTGAGAGGCTTGTACTTGAACAGCTACAGCCACCAATAAATTTGAAGGAACTGAGCATCAGATTCTATGGTGGAAGCAGCTTCCCTAATTGGTTGGGTGATTCTTCATTTGGTAACATGGTGTCATTGTGCATCATGCATTGTTATTATTGTTGGTCATTGCCTCCCCTTGGACGATTGGTTAGTCTCAAAAGACTCTACATTTGTGGGATGAAATCAGTGAAGACTGTTGGTACTGAATTCTATGGAAGTAATTCAACTTCATTTCAACCATTTCCCTCCTTGGAGACCCTAAGCTTTCGAAGAATGCCAGAGTGGGAGGAATGGAACTTGATTGGAGGTACTACTATAGAGTTTCCAAGGCTATCAAAACTATTTCTCAATGATTGTCCCAAACTTAAAGGAACCTTACCCAACAATCTTCCTTCAATTAGTTTTGAATTATCCGATTGTCCTCTATTGGTTCCAATGGTCTGTCCCCAACTCCGAGAAAACTTATCAACCAATTCCCTTTCCTCAATTTTTCTCGAGTCCACCAACTGCATGGTAGACTTAACTATCTCAAACATTACCTCCCCAGCATCCTTAAGAGATGGTCTGCCCACAACATTGCAATCTCTCACTTTACATGATTGTGAGAAATTGGAATTCTTACCTCATGATTCCTTGCACAATTACACTTCACTTAAGAATTTGGAAATGCATAGAAGCTGTTATTCACTGACTTCCTTCACCTTAGGTTGTCTCCCTGTGCTCGAAAATCTTGAGATTTCTGGTTGTAAGAATTTGAAATCCATTTCTTTTGCAGAAAATGCTTCCCAGAGTCTTTCACTTCTTCGACATTTGGTCATAGAGGATTGTCCTGAACTCGACTCACTTCCCGAGGGCGGATTGCCCACTCCTAACCTCATTGATTTGATGGTGTCCAACTGTGGTAAGCTTAAATCACTCCAGCTACAAATTAACACTCTTAATTCCCTTCAACGTTTGATAATCAATGGTCTCCCAAATCTCGAGTCTTTCGCAAAAGACGGTTTGCCTATCAAGCTACGGCAATTAGAAGTCGGTAGACTTGGGGGGAGTTTCTTGACAACAATTATCCGCGACTGGGGTTTGCAGAGGCTAACTTGTCTTTCAAAGTTGTATATTGAAGGTGAAGTTTTGAATGTGCTCATGAAGATGAAAATGTCATTGCTGCCCACTTCTCTTGTGCGGTTAGAGATATATAATCTTTGTGATATAAAAAGCTTGGATGGGAAGTGGCTTCAGCATCTCACCTCTCTTAAAGAGCTTCATATTGAAAATGCTCAACAACTTGAATCCTTACCTGAAGAGGGATTGCCTTCTTCTCTTTCAAAGTTCACCATCTGGACATGTCCATTACTAGAAGCAAGTTGTGTCAAAGGAGAGAAAGAGTGGCCTAAGATTTCTCACATTCCATACATAACTATCAACGGTGAAACGAACACATAA 3816 0.3931 MALVGEALLSAAVEVLLDRIVSHDLFRSKKPDTSLLEKLRITLLSVEALLNDAEEKQFTNPPVKKWLHALKQAFFDAEDLLDQINTEALRCKLEANSPTQSTTHQVLNFLSSPFNKFQKVINSKIQDLFQRLEHLALQKDILQLKEGVSSSVWHGTPTSSVVDESTISGRDGDRKELKKYLMSEDAGGSKIGVVSIVGMGGLGKTTLAKLLYNDLDVQEKFDLKAWAYISKDFDVCRVTKTILESVTYKSIDTDNLNIFQEKLKESLSHKRFLIVLDDIWDGSYVDWNNLMDIFRAGEMGSKIIITTRDKSVAKAMQTYLPIYRLTPLPSDDCWSLLSKHAFGANNCSKQSNLELIGKEISKQCDGLPLAAVALGGLLRTNLSENYWNKVLKSNVWDLPNVKVLPALLLSYHYLPAPLKRCFTYLSIFPKNYRLEKDMVVRLWIAEGLVCQSKSDKTIEEIGDEYFDELVSRSLIHRGSRSGQAIFEMHDLINDLATMISSSYCLRSEEPISHASFESVRHFSYNKGFNKFDFPYGSKGLRTFIALSNLYDLHLSNKVVHDFLPVMKQLRVLSWSRHAHITELPDSLGNLIYLRYLDLSRTKIQKLPDATYKLYNMQTLLLSNCRLLTKLPEDIGNLIYLRYLDLSYTKIQRLPDATCKLYNMQTLLLSYCQLLTELPEDIGNLVNLQHLNIRGTNLKKMPIQIATLQNLHTLSDFVISKTPDGLTVRELKNFSRLRGQLSILKLQNVTDPSEAAQANLKKKDQIDSLALEWDCGMTENTQIERLVLEQLQPPINLKELSIRFYGGSSFPNWLGDSSFGNMVSLCIMHCYYCWSLPPLGRLVSLKRLYICGMKSVKTVGTEFYGSNSTSFQPFPSLETLSFRRMPEWEEWNLIGGTTIEFPRLSKLFLNDCPKLKGTLPNNLPSISFELSDCPLLVPMVCPQLRENLSTNSLSSIFLESTNCMVDLTISNITSPASLRDGLPTTLQSLTLHDCEKLEFLPHDSLHNYTSLKNLEMHRSCYSLTSFTLGCLPVLENLEISGCKNLKSISFAENASQSLSLLRHLVIEDCPELDSLPEGGLPTPNLIDLMVSNCGKLKSLQLQINTLNSLQRLIINGLPNLESFAKDGLPIKLRQLEVGRLGGSFLTTIIRDWGLQRLTCLSKLYIEGEVLNVLMKMKMSLLPTSLVRLEIYNLCDIKSLDGKWLQHLTSLKELHIENAQQLESLPEEGLPSSLSKFTIWTCPLLEASCVKGEKEWPKISHIPYITINGETNT 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01815 1271 PANTHER DISEASE RESISTANCE PROTEIN RP 625 1000 IPR044974 GO:0006952
Cca10g01815 1271 PANTHER DISEASE RESISTANCE PROTEIN RP 20 645 IPR044974 GO:0006952
Cca10g01815 1271 Gene3D - 328 409 IPR042197 -
Cca10g01815 1271 SMART LRR_typ_2 637 660 IPR003591 -
Cca10g01815 1271 SMART LRR_typ_2 684 707 IPR003591 -
Cca10g01815 1271 SMART LRR_typ_2 590 613 IPR003591 -
Cca10g01815 1271 SMART LRR_typ_2 1206 1230 IPR003591 -
Cca10g01815 1271 Gene3D Ribonuclease Inhibitor 674 927 IPR032675 -
Cca10g01815 1271 Gene3D Ribonuclease Inhibitor 1128 1261 IPR032675 -
Cca10g01815 1271 Gene3D Ribonuclease Inhibitor 928 1127 IPR032675 -
Cca10g01815 1271 SUPERFAMILY L domain-like 946 1258 - -
Cca10g01815 1271 Coils Coil 36 56 - -
Cca10g01815 1271 Gene3D Ribonuclease Inhibitor 536 673 IPR032675 -
Cca10g01815 1271 Gene3D - 410 498 IPR036388 -
Cca10g01815 1271 Gene3D - 23 125 - -
Cca10g01815 1271 SUPERFAMILY L domain-like 485 938 - -
Cca10g01815 1271 Gene3D - 154 321 IPR027417 -
Cca10g01815 1271 PANTHER OS05G0414200 PROTEIN 625 1000 - -
Cca10g01815 1271 PANTHER OS05G0414200 PROTEIN 20 645 - -
Cca10g01815 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 425 IPR027417 -
Cca10g01815 1271 Pfam NB-ARC domain 175 392 IPR002182 GO:0043531
Cca10g01815 1271 Pfam Rx N-terminal domain 9 100 IPR041118 -
Cca10g01815 1271 PRINTS Disease resistance protein signature 193 208 - -
Cca10g01815 1271 PRINTS Disease resistance protein signature 266 280 - -
Cca10g01815 1271 PRINTS Disease resistance protein signature 364 378 - -
Cca10g01815 1271 PRINTS Disease resistance protein signature 611 627 - -
Cca10g01815 1271 CDD AAA 169 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01815 Cca-Chr10 34029550 34033819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01815 191 705 WRKY Transcription Factor Family AT5G45050 24.324 1.57e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01815 - - ccaj:109818743 2485.68