Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01812 ATGGCTTTCGGTGTCaagcaaaaggaagaagaagaagcaccttatagaatggaagaagacgaagatgaagaagaagaagaagaagaagaaggagaaCACGTATGGGACGATTGGGAAGGTGAGGAGGGAGAGCGTGAATCGGAATTCGCTTGTCTCTTCTGTGATTCCCACTACAGTTCGTGCGATTCCTTGTTCGACCATTGCGCCTCCCTTCACCACTTCGATTTCCACACAATTAGAGCCACACTTAACTTGGATTTCTATGCCTCCTTCAAGCTCATCAACTTCATCCGCTCTCAGGTGGCAGAAAACAGATGCTGGAGTTGTGGGTTAACATTTCAGTGCAAGCGTGACTTGCAGAATCATTTGCATGATGTAGTTGATTTTAACGAGATAAAGACTCTGTGGAATGATGATAAGTATCTACTACCTTTCATGCAAGACGATTCACTGTTGTACAGTTTTGGCGAATGTGATGAGGAAGGTGAAGATGAACAAATTTCTAGTATTGATGAAGATCTTATAAAGGATTTGATGAACATTGAAGAGAGTATCCGTGACGATCAAGATGCTATGAAGACAGTGGTAGTTGATGACAAACATGATGCTTGTAGAAGAAACAATATTGCTTCCATTTCTAATGATCATTTGAACAGGGCTAGTTCTTCAAACAAGGAACTTACTAATGGTGATGGCTCAAGACATGTTTTGTGTAGTGATAAGGATCCAGAAGGAGGGCATTTGATGGGTAATTCTCAAAATCACATTGTAAAGCATATTAAGAAGGTTAATGAAAGTTATTTTGGGTCTTACAGTTCATTTGGCATCCATCGAGAGATGTTAAGTGATAAGGAAAGAATGGATGCTTATGGCCAAGCAATTTTGAAGAATCCCTCTCTACTAAATGGTGCGGTGGTTATGGATGTAGGTTGTGGAACTGGAATCCTCAGCCTATTTTCAGCAAAAGCTGGGGCTACTAGGGTTATTGCAGTTGAGGCTAGTGCCAAGATGGCAGCAGTGGCATCTCAGGTTGCAAAAGATAATGGTCTTTGGCTGAGTAAAAGCCACAGTGGAGTTGATGGCTTCCAAAATGGCGTCATAGAAGTGGTTCATGGTATGGTTGAGGAGATTGATAAAACAGTTGAACTTCAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGATATTGCTTGCTGTATGAATCCATGCTTGGTTCAGTGCTTTATGCACGGGACCGGTGGTTGAAGCCTGGTGGTGCCATTCTTCCTGACACAGCAACTATTTTTGTTGCAGGATTCGGAAAAGGAGCCACAAGTCTTCCATTTTGGGAAAATGTGTGTGATTTTGACATGTCTTGCATTGGGAAGGAGCTTGTCATAGATGCTGCTCAAATTCCTATAGTTGATGTTGTGGACTCTCAAGACTTAGTTACCAGTTCTTCAATTCTTCAGACCTTTGATTTGGCAACCATGAAGCCCAATGAAGTGGATTTCACTGCAACTGCTACTTTGGAACTGAAACCGAGTGCTTCACGGAACAAAGTGACACAGTTAAATTCCAAAACATGCTGCTGGTGCTATGGCGTTGTCCTATGGTTTGAAACTGGATTTACAAGCAGATTCTGCCGTGAAACACCGGCTGTGTTATCCACATCCCCTTACACACCAAAAACACACTGGTCACAAACAATCTTAACCTTTCGAGAACCTATTGCAATGGGACCTGGAAAAGAAAATGGGGGTAAACTGGAAGCAATCGGCACTGACGTGTATCCTGCTGTGAAGATTGATTTACGTGTCAGCATTGTCCGCTCTACTGAGCATCGCAGCATTGACATTTCCTTAGAAGCTGCTGGTGTTGGTCATGATGGTCACAAACGCAGTTGGCCTGCTCAGATTTTTACTCTGCAGTAG 1920 0.4104 MAFGVKQKEEEEAPYRMEEDEDEEEEEEEEGEHVWDDWEGEEGERESEFACLFCDSHYSSCDSLFDHCASLHHFDFHTIRATLNLDFYASFKLINFIRSQVAENRCWSCGLTFQCKRDLQNHLHDVVDFNEIKTLWNDDKYLLPFMQDDSLLYSFGECDEEGEDEQISSIDEDLIKDLMNIEESIRDDQDAMKTVVVDDKHDACRRNNIASISNDHLNRASSSNKELTNGDGSRHVLCSDKDPEGGHLMGNSQNHIVKHIKKVNESYFGSYSSFGIHREMLSDKERMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFSAKAGATRVIAVEASAKMAAVASQVAKDNGLWLSKSHSGVDGFQNGVIEVVHGMVEEIDKTVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGATSLPFWENVCDFDMSCIGKELVIDAAQIPIVDVVDSQDLVTSSSILQTFDLATMKPNEVDFTATATLELKPSASRNKVTQLNSKTCCWCYGVVLWFETGFTSRFCRETPAVLSTSPYTPKTHWSQTILTFREPIAMGPGKENGGKLEAIGTDVYPAVKIDLRVSIVRSTEHRSIDISLEAAGVGHDGHKRSWPAQIFTLQ 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01812 639 MobiDBLite consensus disorder prediction 1 40 - -
Cca10g01812 639 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 19 637 - -
Cca10g01812 639 Gene3D - 427 636 - -
Cca10g01812 639 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 19 637 IPR025799 GO:0016274|GO:0018216
Cca10g01812 639 SUPERFAMILY beta-beta-alpha zinc fingers 33 167 IPR036236 -
Cca10g01812 639 MobiDBLite consensus disorder prediction 14 40 - -
Cca10g01812 639 CDD AdoMet_MTases 306 424 - -
Cca10g01812 639 Pfam Methyltransferase domain 306 421 IPR041698 -
Cca10g01812 639 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 270 583 IPR029063 -
Cca10g01812 639 Gene3D Vaccinia Virus protein VP39 256 425 IPR029063 -
Cca10g01812 639 Pfam C2H2 type zinc-finger (2 copies) 51 125 IPR041661 -
Cca10g01812 639 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 264 596 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01812 Cca-Chr10 33920691 33926129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01812 21 638 C2H2 Transcription Factor Family AT3G12270 55.276 0.0 665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01812 10 33920691 33926129 Cca10g01812 10 33920691 33926129 ECH