Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01807 ATGAAAGTGCCGTGTTGTTTGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGAGTTCCGCTTCTGCTCCAATGCGGACACGGCTTCTGCAGGGACTGTCTTTCCACAATGTTCTCCGAGTCTTCGGACGCCACACTCACGTGTCCGCGCTGCCGCCACGTGTCCACCGTCGGGAACTCCGTGCAGGCGCTGCGCAAGAACTACGCTGACCTGAAGCTGGTGCGGCGGATTGGGGAGGGGAGGAGGGCGGGGGTGGAGATGTGGATGGCGGTGATCGGCGGTGGAGAGGGAGGACGGCGGTGCCGGCACAGCGTGGCGGTGAAGAAGGTGGCGGTGGGGGAGGGGATGGATTTGGATTGGGTGCAAGGGAAATTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGTACTTTCCATGGGACAATGAGGGTGGAGGAGAGTTTGTGCCTCGTGATGGATAAGTGTTATGGATCGGTTCAGTCTGAGATGCAGCGCAATGAAGGGAGGCTCACTTTGGAGCAAGTCCTAAGATATGGGGCAGACATTGCACGAGGGGTTGTTGAGCTTCATGCTGCAGGCGTTGTTTGCATGAACTTAAAACCTTCCAATCTTCTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTTAAGAAGCCTTTGTGTTGGAAGGCTCGACCAGAGTGTGACTCTGCGAAAATCCATTCCTGTATGGAATGCATAATGCTCAGCCCACATTATACGGCACCGGAGGCTTGGGAACCAGTGAAGAAGTCATTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCTGAATCAGATGCCTGGAGTTTTGGTTGTACACTGGTGGAGATGTGCACGGGATCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATCTATCGATCAGTTGTTAAAGCTAAGAAGCAGCCTCCACAGTATGTTAGTGTGGTTGGTGGTGGAATTCCAAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCAGCAAGCCCCGATAATGGCTTAGACAAGGGCTCTGTGTCAAATGTGATGGAGCCTTCCCCAGCACCTGAATTGGAAGTTCCTCTGGAAAATCCAAACCATCTTCATCAACTAGTGTCTGAAGGAGATACTGCAGGTGTTAGAGATCTTCTTGGAAAGGCTTCCTCAGAAAATGGCAGCAACTACCTATCTTCACTATTGGAAGCTCAAAATGCTGGTGGGCAAACGGCTCTCCACTTAGCTTGTAGACGTGGTAGTGCAGAGCTTGTTGAGACAATTCTGGAGTATAGAGAGGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGATCCCCAGAATGTGTTCGTAGCCTTATCAAAAGAAATGCTAATGTGCGGTCACGATTGAGAGATGGTTTTGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGCCAACCAGATTGTATGCGAGAACTACTATTAGCTGGAGCTGATCCCAATGCAGTGGATGATGAAGGTGAATCTGTTCTGCATAGGGCAATTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAGAATGGAGGCTGTAGATCAATGGCCATCATGAATTCAAAGAACCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTGTTGTTGTGAAGAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGGAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCCAAGAAAGACCATGAAAGTGAGGGGAGAGAACTGGTGCAGATATTGCTTGCAGCTGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACTAACGACGTGGACTTGGTTAAGGTTATTCTAGCTGCTGGGGTTGATGTGAACATTCGCAACGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCAGATTATAATTTGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAGACAGCAAAAATGATTCGTGAAAATATTGACTGGCTCATTGTTATGCTAAAGAATTCTGATGCTGATATTGAAGTCAGAAACCACAGCGGCAAGACACTACGTGACATCTTAGAGGCTCTCCCTCGAGAATGGTTATCTGAAGATCTGATGGAAGCACTCATGAATAAGGGAGTTCATTTGTCTCCTACAACATTTGAAGTGGGAGACTGGGTGAAGTTTAGAAGATCTATCACAACTCCAACACATGGATGGCAAGGTGCTAAACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGATAGAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGGTTCATGTTCTGGCAAATGAAGTTATAAAAGTCATTCCATTAGACAGGGGACAACATGTTCAACTGAAAGAAGATGTAGAAGAGCCTAGATTTGGTTGGCGTGGGCAGTGTCGTGACAGCATTGGGACTGTATTATGTGTAGACGATGACGGAATCCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGATCCTGCAGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGATTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGGTCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATTCGACCAGATAGTAGTCTCTTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGTGATCGGGTATGTGTGAAACGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGATATACCAAATCGACCCATACCATGGCAAGCTGATCCATCGGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGACGATATTACAAGGAATAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGTGATATGGGAGTAGCTTTTTGCTTCAGAAGTAAGCCTTTTCGTTGCTCAGTCACTGATGTAGAGAAAGTTCCTCCATTTGAGGTGGGACAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTTGGGTGGTCAAATGAATCGCCAGCCACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAACTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGGCTTCCAGGATTTGAAGTTGGGGATTGGGTACGCTCAAAACCAAGCCTGGGAACCAGACCAAGCTATGACTGGAATAATGTTGGGAAAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATATTTGGAGTTGGCTTGCTGTTTTCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTATAAAGTTGGGCAGTATGTTAGGTTCCGAGCTGGTTTGGTTGAACCAAGGTGGGGTTGGAGAGAAGCTCAGCCTGAATCTCGAGGGGTTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTTGCATTTTTTGGTCTGCCAGACCTGTGGCGTGGAGATCCTGCAGACCTTGAGATTGAACAAATGTTTGAAGTGGGTGAGTGGGTGAGATTGAAAGATAATGCAAATAATTGGAAATCAATTGGGCCAGGTAGCATTGGTGTCGTTCAAGGAATGGGGCTTGAAGGATATGAATTGGGCAGAAGCATATACGTTGGATTTTGTGGGGAGCAAGATAAGTGGGAAGGACCAAGTTCTCATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTAAAACAATGTGTAAGGCAACCAAGATTTGGATGGTCAGGGCATACCCATGCAAGTATTGGGACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCAGGAACGAAAGCGTGGATGTTGGATCCATCAGAAGTGGAAGTGGTGGAAGAGAAGGAGCTCTGTATAGGAGATTGGGTAAGGGTCAAAGCATCAGTTTCAACCCCAACCCACCATTGGGGGGATGTGAGTCATTCAAGCCTTGGAGTAGTGCATCGGATGGAAGACGAGGATCTGTGGGTGGCGTTCTGTTTCATGGAGAGGCTATGGCTTTGTAAGGCATGGGAAATGGAACGGGTTAGGCCATTTAAAGTGGGGGACAAGGTAAGGATCAGAGATGGATTGGCAAACCCGCGATGGGGATGGGGAATGGAGACACATGCCAGCAAGGGACAGGAAAATGAAAGGTTGGAATGCAGTTTGGCCACATGTATTGATGCTAATAAACAGAGGAGTGAAAGAATTGAAGCTGTGGAGATAGGATAA 4662 0.4655 MKVPCCLVCQTRYNEEERVPLLLQCGHGFCRDCLSTMFSESSDATLTCPRCRHVSTVGNSVQALRKNYADLKLVRRIGEGRRAGVEMWMAVIGGGEGGRRCRHSVAVKKVAVGEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEESLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPLCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRSVVKAKKQPPQYVSVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDKGSVSNVMEPSPAPELEVPLENPNHLHQLVSEGDTAGVRDLLGKASSENGSNYLSSLLEAQNAGGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSPECVRSLIKRNANVRSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKYTDCALVILENGGCRSMAIMNSKNLTPLHLCVATWNVVVVKRWVEVATSDEIAGAIDIPSPIGTALCMAAASKKDHESEGRELVQILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENIDWLIVMLKNSDADIEVRNHSGKTLRDILEALPREWLSEDLMEALMNKGVHLSPTTFEVGDWVKFRRSITTPTHGWQGAKPKSVGFVQSVPDRDNLIVSFCSGEVHVLANEVIKVIPLDRGQHVQLKEDVEEPRFGWRGQCRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIDIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWDDITRNSIGVIHSLEEDGDMGVAFCFRSKPFRCSVTDVEKVPPFEVGQEIHVMPSVTQPRLGWSNESPATVGKIVRIDMDGALNVRVTGRQNLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNNVGKESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSYKVGQYVRFRAGLVEPRWGWREAQPESRGVITSIHADGEVRVAFFGLPDLWRGDPADLEIEQMFEVGEWVRLKDNANNWKSIGPGSIGVVQGMGLEGYELGRSIYVGFCGEQDKWEGPSSHLERFDKLFVGQKVRVKQCVRQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGTKAWMLDPSEVEVVEEKELCIGDWVRVKASVSTPTHHWGDVSHSSLGVVHRMEDEDLWVAFCFMERLWLCKAWEMERVRPFKVGDKVRIRDGLANPRWGWGMETHASKGQENERLECSLATCIDANKQRSERIEAVEIG 1553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat profile. 514 546 IPR002110 GO:0005515
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat profile. 479 511 IPR002110 GO:0005515
Cca10g01807 1553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 69 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Cca10g01807 1553 SUPERFAMILY Protein kinase-like (PK-like) 61 389 IPR011009 -
Cca10g01807 1553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat region circular profile. 660 691 - -
Cca10g01807 1553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 70 1524 - -
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat region circular profile. 693 725 - -
Cca10g01807 1553 MobiDBLite consensus disorder prediction 370 400 - -
Cca10g01807 1553 SMART ANK_2a 514 543 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 547 578 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 726 761 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 660 689 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 620 655 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 693 722 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 445 475 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 582 611 IPR002110 GO:0005515
Cca10g01807 1553 SMART ANK_2a 479 508 IPR002110 GO:0005515
Cca10g01807 1553 Pfam Ankyrin repeats (many copies) 517 564 IPR002110 GO:0005515
Cca10g01807 1553 Pfam RING-type zinc-finger 6 49 IPR027370 -
Cca10g01807 1553 SMART ring_2 6 51 IPR001841 -
Cca10g01807 1553 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Cca10g01807 1553 ProSiteProfiles Protein kinase domain profile. 71 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01807 1553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 70 1524 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Cca10g01807 1553 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Cca10g01807 1553 Gene3D - 660 793 IPR036770 -
Cca10g01807 1553 PRINTS Ankyrin repeat signature 446 461 IPR002110 GO:0005515
Cca10g01807 1553 PRINTS Ankyrin repeat signature 642 656 IPR002110 GO:0005515
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat profile. 445 478 IPR002110 GO:0005515
Cca10g01807 1553 Pfam Protein kinase domain 102 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat profile. 660 692 IPR002110 GO:0005515
Cca10g01807 1553 Pfam Ankyrin repeats (3 copies) 639 724 IPR002110 GO:0005515
Cca10g01807 1553 Pfam Ankyrin repeats (3 copies) 408 507 IPR002110 GO:0005515
Cca10g01807 1553 Pfam Mind bomb SH3 repeat domain 925 1045 IPR040847 -
Cca10g01807 1553 Pfam Mind bomb SH3 repeat domain 1177 1298 IPR040847 -
Cca10g01807 1553 Pfam Mind bomb SH3 repeat domain 1051 1169 IPR040847 -
Cca10g01807 1553 Pfam Mind bomb SH3 repeat domain 1304 1425 IPR040847 -
Cca10g01807 1553 Pfam Mind bomb SH3 repeat domain 852 919 IPR040847 -
Cca10g01807 1553 Gene3D - 513 659 IPR036770 -
Cca10g01807 1553 Gene3D - 401 512 IPR036770 -
Cca10g01807 1553 Gene3D Transferase(Phosphotransferase) domain 1 158 377 - -
Cca10g01807 1553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 69 - -
Cca10g01807 1553 SUPERFAMILY RING/U-box 5 60 - -
Cca10g01807 1553 SUPERFAMILY Ankyrin repeat 441 768 IPR036770 -
Cca10g01807 1553 ProSiteProfiles Ankyrin repeat region circular profile. 445 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01807 Cca-Chr10 33761282 33774777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01807 53 394 MAP Kinase Kinase Kinase AT1G53570 24.011 9.70e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Cca10g01807 Pkinase 5.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01807 K16279 - gmx:100777576 2824.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01807 10 33761282 33774777 Cca10g01807 10 33761282 33774777 ECH