Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01804 ATGGAATTCTCTTTGCAAAGCAATGTGAAAAGACATGTTGAGCATGTCCATGGTGACAGTTCTACCTCTACGAATAACAAAAGTCACAAGCAACACAGATGTCCAGAAACTGGCCGTGGAAAGAACTTCTGTGGGATGTTTGTAAGGTGCTTGTTTATTGTGAAAGATGTTGGGCACAATTATGAAGAAAGCCTTTATTCTGGAGTTAAGTTGGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTTAAGTCCTCCCATCAATATATGACCTGTGACATATGTGGGACTAAGCAACTAAAGAAGAATATTAAGCATCACCTACGTTCACATGAACCTAGCAGTTCATCAGAGACATTCCGATGCGAGTTTAAAAGTTGTAGCTGCACATTCTCAAGAAAATCTAATCTTGACAAGCATATGAAGGCTGTGCACTTTAAGGAAAAGCCTTTTGTTTGTGGCTTCCCTGACTGTGGCGTGAGATTTGCTTACAAACATGTGCGAGATAACCATGAAAAAACTGCAAAACATGCTTTTACTCTCGGGGATTTTGAAAAAGTTAATGAAGAGTTCAAGTCTAGGCTGATGGGAGGGAAGAAGAGGAAATTTCCTACCGTTGAAATGTTAGTTAAGAAAAGGGTTGCCTCACCAAGTCAATTGCAGAATTGGTTATTCATGCAGTAG 726 0.405 MEFSLQSNVKRHVEHVHGDSSTSTNNKSHKQHRCPETGRGKNFCGMFVRCLFIVKDVGHNYEESLYSGVKLESVDVVCLEPGCMKHFTNVQCLQAHVKSSHQYMTCDICGTKQLKKNIKHHLRSHEPSSSSETFRCEFKSCSCTFSRKSNLDKHMKAVHFKEKPFVCGFPDCGVRFAYKHVRDNHEKTAKHAFTLGDFEKVNEEFKSRLMGGKKRKFPTVEMLVKKRVASPSQLQNWLFMQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01804 241 MobiDBLite consensus disorder prediction 1 35 - -
Cca10g01804 241 PANTHER - 2 232 - -
Cca10g01804 241 ProSitePatterns Zinc finger C2H2 type domain signature. 136 159 IPR013087 -
Cca10g01804 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 164 IPR013087 -
Cca10g01804 241 Gene3D Classic Zinc Finger 102 161 - -
Cca10g01804 241 SMART c2h2final6 134 159 IPR013087 -
Cca10g01804 241 SMART c2h2final6 76 101 IPR013087 -
Cca10g01804 241 SMART c2h2final6 165 191 IPR013087 -
Cca10g01804 241 SMART c2h2final6 104 125 IPR013087 -
Cca10g01804 241 ProSitePatterns Zinc finger C2H2 type domain signature. 78 101 IPR013087 -
Cca10g01804 241 SUPERFAMILY beta-beta-alpha zinc fingers 116 171 IPR036236 -
Cca10g01804 241 PANTHER ZINC FINGER PROTEIN 2 232 - -
Cca10g01804 241 Gene3D Classic Zinc Finger 162 188 - -
Cca10g01804 241 ProSitePatterns Zinc finger C2H2 type domain signature. 167 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01804 Cca-Chr10 33711975 33712996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01804 17 194 C2H2 Transcription Factor Family AT1G72050 49.451 4.80e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g01804 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01804 K09191 - gmx:100801812 356.295