Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01800 ATGGAGGATAAAGCAGAGAAGCAAGATGACAATAACCACCCATCTCTCCTCCTTCCCAATCACAACACCATCATCAAGGAAGAGTCACCAAGGAAAAACATtggtggtggtggtggtggtggAAGTGATAGGTTGAAGAGAGATGAGTGGAGTGAAGGGGCTGTTTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCAAACTCCACCAAGTCACCAAAGACACAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAGAGGTACAGATCAGAGTCTGCTTCCACTGCAGATGCTTCCTCTTGGCCTTTGTACTCTCGCCTTGATCTTCTTCTGCGTGGGACAGGACCACTTTCTTCGCTTCCACCACCACCACTAATAGCTACAGCAACAATAGCACCATCTCAACAATCACCACATGCCACCAATAACCAGGCTTTGGTGCTGTTGGAGCCACCTTCACTGGCAGTTTCACAAGCACCTCCTCTTGTTGCCCCTCCACCTCCCCCAATTGCTCAAAACTCACATGGCTCCAATGGTGTTGAAAGACTGCACAAGGAAGATGGGTTAGGAGCCAAGTCATCAGAGCATGTATCTAACAAGAATCCAATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGACAAGGTGAGATGCaacaagaggaagatgaaaagtgagagcaacaaaaggagaaggaacaataatgaagaaAACATGGAAATAGCAGAGAGCATAAGGTGGCTTGCGGAAGTGGTGGTGAGGTCAGAACAAACGAGAATGGACACAATGAAAGAGATAGAGAGGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAAATGGAGCTTAAGAGAACTGAAATCATTGCCAACACACAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCATCATTGAGAATTGGAAGAAGTTAA 1032 0.4273 MEDKAEKQDDNNHPSLLLPNHNTIIKEESPRKNIGGGGGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESASTADASSWPLYSRLDLLLRGTGPLSSLPPPPLIATATIAPSQQSPHATNNQALVLLEPPSLAVSQAPPLVAPPPPPIAQNSHGSNGVERLHKEDGLGAKSSEHVSNKNPMDSDSSTPALYSEKDKVRCNKRKMKSESNKRRRNNNEENMEIAESIRWLAEVVVRSEQTRMDTMKEIERMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01800 343 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 25 339 - -
Cca10g01800 343 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 25 339 IPR044823 -
Cca10g01800 343 MobiDBLite consensus disorder prediction 219 235 - -
Cca10g01800 343 MobiDBLite consensus disorder prediction 88 103 - -
Cca10g01800 343 MobiDBLite consensus disorder prediction 204 218 - -
Cca10g01800 343 Coils Coil 291 311 - -
Cca10g01800 343 MobiDBLite consensus disorder prediction 85 104 - -
Cca10g01800 343 MobiDBLite consensus disorder prediction 1 48 - -
Cca10g01800 343 MobiDBLite consensus disorder prediction 183 265 - -
Cca10g01800 343 Gene3D - 50 115 - -
Cca10g01800 343 MobiDBLite consensus disorder prediction 183 197 - -
Cca10g01800 343 Pfam Myb/SANT-like DNA-binding domain 47 134 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01800 Cca-Chr10 33581618 33583896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01800 38 326 Trihelix Transcription Factor Family AT3G14180 26.686 1.35e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca10g01800 Myb_DNA-bind_4 7.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01800 - - gmx:100799917 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01800 10 33581618 33583896 Cca10g01800 10 33581618 33583896 ECH