Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01799 ATGGACACCAAGCGTTTAACCATCCGCACCCTCGTCTCCGCCCTCACTTCCCCCTCCGACCAAACCCGCCTCGCCGCCCTCCGCCACCTCCACCGCACCTCCAACGAAGACTCCGCAGCCCGCCCCCTCATCGCCGCCGCCGGTGCTGTCCCCCTCCTCGCCGCAGCCCTCTACTCCGCCTCCCACCCCATCCAAGACCACGCCGCCGCCACCCTCCTCAACCTCTCCATCTCGGACCGCCGCCCTCTCCTCTCCTCTCCCGCCCTCCTCCCCGCCCTTGCCCACCTCCTCTCCCGCCACGCCACCTCCTCCGCCGCCTCCTCCGTCCAGGCCGCCGCCGCCACCCTCCACAGCCTCCTAGCTGTCGTTGCCGAATTCCGCCCGATCGTCAGCTCAAACCCCGACATCCTCCACGCCCTCGTCGGCATAATCAGTCACCCTGATTCTCCGACGAGGTCCGTGAAGGACGCCCTCAAAGCGTCATTCGGCGCAGCACTTTACCCGCCGAGCCGGGTCACGCTGATCCGGCTGGGCGTTGTTCCGTTCCTCTTCGGCCTGGTGGCGAAGGGGAAGGACGGGAAGAGGAGGATTGGCATAATTGAGGACGCTACTGCGGTGATCGCGCAGGTTGCGGGGTGCAAAGAGAGCGAGGAGGCGTTTGCGAAGGTTTCGGGGGTTTCCGTGTTGGCCATGATGTTGGGTTCGGAGAGTGGGAGTTGTAGTTTGAGGACGAAGGAGAATGCGGTTGCGGCGCTTTTGAATTTGGTGAGGTGTGGGAGCGAGAAAGTTGTTGGGGAGGTTAGGGACAAAGTTGGTGCTTTGGATGGCATCGCCTACGTGCAGGAACACGGTAGCGCCAAAGGGAAGAGCAAAGCCATAGCGTTTTTTAAGCTCTTGCTTGATGGTGAAATTGCTGAAGATTTGTATCCCCTTGACTCAGACTCGGCTTCAAGTTCGAGTTGCAGTGGGTAA 972 0.6204 MDTKRLTIRTLVSALTSPSDQTRLAALRHLHRTSNEDSAARPLIAAAGAVPLLAAALYSASHPIQDHAAATLLNLSISDRRPLLSSPALLPALAHLLSRHATSSAASSVQAAAATLHSLLAVVAEFRPIVSSNPDILHALVGIISHPDSPTRSVKDALKASFGAALYPPSRVTLIRLGVVPFLFGLVAKGKDGKRRIGIIEDATAVIAQVAGCKESEEAFAKVSGVSVLAMMLGSESGSCSLRTKENAVAALLNLVRCGSEKVVGEVRDKVGALDGIAYVQEHGSAKGKSKAIAFFKLLLDGEIAEDLYPLDSDSASSSSCSG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01799 323 SUPERFAMILY ARM repeat 7 300 IPR016024 -
Cca10g01799 323 PANTHER U BOX DOMAIN-CONTAINING 2 305 - -
Cca10g01799 323 Gene3D - 1 296 IPR011989 -
Cca10g01799 323 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 305 - -
Cca10g01799 323 SMART arm_5 213 257 IPR000225 GO:0005515
Cca10g01799 323 SMART arm_5 167 212 IPR000225 GO:0005515
Cca10g01799 323 SMART arm_5 37 77 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01799 Cca-Chr10 33552220 33553751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01799 8 299 U-box Gene Family AT1G23030 29.010 3.28e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01799 - - gmx:100803111 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01799 10 33552220 33553751 Cca10g01799 10 33552220 33553751 ECH