Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01789 ATGTTAGGCCTTAGAGACCTAGTTCTGATAGCTCCAACGCACCAAGGGCAACCCATCTCAGAAAACCACAGCAACAGTGCTCCCAACCTCCCTCTGCCTTCTTCGGCAGCACTCAGCGTTGGGTTCGGCATTTTCCCTCTCCTCACGGCCACGCCATGCGTGCCACACCCTCACCAAACCAATCACGACCCTCATCAAGACCCCACCAACTGTTGGAACCTCAAGATGTGCCCAGAACCCAATGTGCCCCCCAAGAAGGGTCCCATCCACGTGGACCACGATCACGACCAGAATCACCACAAGGGTCTCGCCGAGAGCGATGAAAACGGGGCCTTTGGACCCGACTTTAGGGCGTGTCAGGACTGCGGCAACAGGGCTAAGAAAGATTGCATTTTCAGAAGGTGTAGGACTTGTTGCAAGGGACGTGGCTACGATTGCAACACTCACGTGAAGAGCACGTGGGTCCCCTCAATTCGCCGCCGGGAGAGGGACACGGTGGTTCcctccgccgccgccgccgccgccgccgTTAAGAGGCCCAGACCTTTGGTGGGGTCATCGCAAAATGCCACTGCCACCTCTCATAGTTCCAACTCTAATGCTACAACACCTAAGAGCTTAGCTACTACTACTACCTCTTCTCATCAACAAGATGCTAGCTTCAAACAGTCTTTACCGGGACATGTTCGTGCACCTGCGGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAATTTGCGTACTTGGCCACGGTGCACATTAGTGGCCACGTGTTCAAGGGGTTTCTCTATGACCATGGTGTTGATGGGAAaaatgcaaatgcaaatgcaaatgcaGTGCCTTGTGTTTCGGAACTGCAACTGGGGAACAATTGCAGTGGGAAGAACAGGGAATGTTCTTCTGCAATTGGGGTTCCAACCACCAATGACTACCCTGCTTCTGCGAGTTGA 963 0.5016 MLGLRDLVLIAPTHQGQPISENHSNSAPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNHDPHQDPTNCWNLKMCPEPNVPPKKGPIHVDHDHDQNHHKGLAESDENGAFGPDFRACQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWVPSIRRRERDTVVPSAAAAAAAVKRPRPLVGSSQNATATSHSSNSNATTPKSLATTTTSSHQQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKNANANANAVPCVSELQLGNNCSGKNRECSSAIGVPTTNDYPASAS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01789 320 MobiDBLite consensus disorder prediction 184 223 - -
Cca10g01789 320 Pfam Domain of unknown function (DUF702) 118 273 - -
Cca10g01789 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 319 IPR007818 GO:0003700|GO:0006355
Cca10g01789 320 MobiDBLite consensus disorder prediction 159 225 - -
Cca10g01789 320 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 1 319 - -
Cca10g01789 320 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 119 160 IPR006510 -
Cca10g01789 320 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 225 272 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01789 Cca-Chr10 33386746 33391329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01789 1 306 C2H2 Transcription Factor Family AT5G12330 40.938 5.59e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca10g01789 DUF702 9.7e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01789 - - vun:114175485 463.381