Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01779 ATGTGCATGCCACCCTCCTTCATCACATCACTTTTTTCATTCTTTCTTCTATTCCTATTCATTTTTCTCTCCCTAGCTTCTTTTTTCCTATTGCTTTTTCACCTCATCATCGAAATTATGGGCATAGCCGCAGAGGCCCCGTTTCATGTTTTGGCTGTTGATGATAGCCTTATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACTTCTTCCTTTCATGTAACAGCCGTGGATTCTGGCAGTAAGGCTTTGAAGCTTCTTGGTTTGGTTGAAGATGAGCAGATAAATGAAGAGCCTCCCTCTATTGCTCTAGAAGCTCATCAGGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACTGGCTATGACCTGCTGAGAAAGATCAAGGAATCCAGATCTCTTAAAGACATACCTGTGGTGATTATGTCCTCAGAAAATGTCCCATCAAGGATCAACAGATGCCTAGAAGATGGTGCTGATGAATTCTTTTTGAAACCAGTTCAACTGTCAGATGTAAACAAACTCAGGCCTCATTTGTTGAAATCAAAAGTTAAGGACGAGGAAGACCAACAAATCCATGACAAAGGGATTAATGAAACAGAAGTCATTGCCCCAGATAAAACTATACCAAAAAATATTGTCACAAAAAATGGTTAA 672 0.3958 MCMPPSFITSLFSFFLLFLFIFLSLASFFLLLFHLIIEIMGIAAEAPFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSGSKALKLLGLVEDEQINEEPPSIALEAHQDVEVNLIITDYCMPEMTGYDLLRKIKESRSLKDIPVVIMSSENVPSRINRCLEDGADEFFLKPVQLSDVNKLRPHLLKSKVKDEEDQQIHDKGINETEVIAPDKTIPKNIVTKNG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01779 223 SUPERFAMILY CheY-like 47 185 IPR011006 -
Cca10g01779 223 ProSiteProfiles Response regulatory domain profile. 49 185 IPR001789 GO:0000160
Cca10g01779 223 CDD REC_typeA_ARR 50 180 - -
Cca10g01779 223 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 28 195 - -
Cca10g01779 223 Pfam Response regulator receiver domain 50 177 IPR001789 GO:0000160
Cca10g01779 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 195 IPR045279 GO:0009736
Cca10g01779 223 Gene3D - 49 212 - -
Cca10g01779 223 SMART REC_2 48 181 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01779 Cca-Chr10 33001647 33003452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01779 40 198 Response Regulator Gene Family AT3G57040 66.250 5.18e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca10g01779 Response_reg 8.6e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01779 K14492 - gmx:100818762 289.656