Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01772 ATGACCAGCACCAGCACCTTCGCGGACCACAAACTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTCAATAATCAGAGCGACGACGCCCCACGCTTCGGCGAGCGCTGCGAGGTCTTCGGCGACGGCGGCGAGGTCGGTTTCCGGACCCGAAGCGGCGTCGTTTTGGGTGCGCTCGATTCGCCGCAATGCGGAGGCTCCAAATCGAAGCGCACGAACAAGATCGGGATGGTGAACGGGAGCGTGAGCGTGGTTCACCAGCTCGACGCTATGGTCACCCGCAAGTGCACCGAAATCGATGCTCGCGTCGTGTGCGTTGACGCGCCTAGGGTTGTGCTCCTCGTTGACGTGTATCTCCCAATTCAGGTCTGGAGCGGCTGGCAGTTTCCGCGATCCGGGGCCGTCGCCGGCGCCGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGAGAAGTTCAATGCTTTCATCTCCAGACTATTGTAGGAAGGTTTGTGCAGCTAATGAAAAGATTTCAAACCTTTCTGATTGTCATGTACTTGGCTGCACGCTTCATTCCCGTGCGAGCAGTTCCTCAAAGAAAACACTATTTGAACTTCATGAAATTTTTAAGACACTGCCTGGTGTAGGAAAACGGGAGATGACTGATAGTCCCAAGATAATGCCAATAGAAAACAGTGGTGAATTAGGCATTTGGTCGATACCTGATGACATTTTGACTAAAATTTTAGCTTCCCTGGGTCCGATGGACCTCACAAGGGTTTCTGCAACATGTCGTCATCTAAGATCCTTGGCTGCTTCAGTAATGCCGTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGACAGCAGTTGAGTGGATGCTGCATCGCGAGCGGGGTGCTGAGCTTTTGCCACATCCTTTATTTGTACCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCAGGTGAAATTGTCACTGGGGAAGCTCCAACTGTCAAGGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGATTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACACGAGGTTCATTGGCTGATCCACCAGATGGGGCACAGCTAGTCTGGTGTCAACATAATGGTAATCAGAACTGTGGTTATTATGAGATCAGTGGTAATAACATCACTGGTTGTACTACCTTGGGTAAAAGGGATGGGTGCCAAGATGTCAGTAGAACTAATGATAACCATGATAGTTCCTCCAAAAGAGTGAGATTGACAGATCCAGAGCAGCAAATCACTACACTTCATGGTTCATGTCTCCTGGAAGAAAACAAATCACCTGTAGCTGCATCCTTTAAGGAATCAATGCATTCAAATCGGCTCACTAGGAGTTTGAGTTGCATAAAGAAAAACCTACTTTTCACTTATGATGAGGAAGCTATGAATTCCAAGGAAAAAGAATTTGGTGAAGGATTAGTTAAAGCAAAGCATGCATCAGAGACTGCATCTCTTGCATCTCAAAACAAGCTAGTTAGTGCTTCTTATGGATGTGGACAGAGTTACAAGTTGCCTAGGAAGACTAAAGGTGATGGTTTGGAGTACAGTGATACATGGATTCAGTGTGATGCATGTCACAAGTGGCGAAAGCTTGAAGACAATAGTATGGCTAATTCTAGCTCAGCATGGTTCTGTAGTATGAACACTGATCCTTTCTATCAAAGTTGTAGTGTCCCTGAACAAAATTTTTCTCATAGCTGTGAGATAACACACTTCCCAGGGTTTCACTTGAAAGGAACTTGTGGTGGTGAGAAACAAAATGTTTCTTTTTTCACTAACGTGCTTAAGGAGCACTACTCCATGATAGATGTGCGAACAAGGAAGGCCCTCACATGGTTGGCTAAAATTCCGACATACAAGCTTGCAGGAATGGAAGCAAATGGCATAAGGGGTCCTATTTTAGACAATTGTTCTGCACCTAATGGACATTGCAATGCATTTCACAAAATATTTCAAGCATTTGGCCTCCTAAAGAGAGTAGAGAAAGGTGTGTGCAAGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCTGTGAGCCACTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTCAGTCCTGGTCAATTGCGGGTTTATGTTTGGACCGATCATCGGAAGCCTTCTGTGCATTGTCTTGCATGGGATTATGATGTTGTGATCACTACTTTTAGCCGTTTGAGTGCAGAATGGGGCCCACGCAAGAGGAGTGTTTTGATGCAAGTGCACTGGTTTAGGATAATTTTAGATGAGGGGCACACTCTTGGGTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAACCGATGGATACTAACAGGaactccaacaccgaacactcctaacagccaacttccacatctacaaccaTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGGTCTCGTTTGTTATGTTTACTTCATAAATGCATGATTAGTGCTAGAAAGACAGATTTACAAAGCATTCCAGAATGCATCAAGAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTACTCACTGTACGACGTAATATATTAATGGCTGATTGGAATGATCCTTCCCATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTTTAAAAAATGTCAGGCTTTCATGCTGTGTTTCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGACATGCTAGCACAAAGTGGTCTAGATCCTACTTCAGGAGAGTATAGCTCCATAAGATTTATTCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGCTTGTTACACCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACAATACAAAGTGTACTTATCCTGGCTGTGGTAAATTGTATGAGATGCAGAGTAGATTGGCCAGACCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCCTATCTCGTCCAGAGGTTGAAAGCTTTGCGTGGAACTGATGAAGGAACAAACTTGAATGCTGACAATAGCAATGAAGCGATGCATATTGAGAAAGGTGTCAGAAATGTTCAGAAATATTCTATGAGCAGCACAAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTGGAGCACATACATGTCATTGAACAGCAGTTGACTGTTGCTGGTATCAAATACACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAAAAGTCACTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCTCTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGGTTAATACATCAAACTAATCTAATTTTGCAAACAAAGTTATAA 3726 0.4294 MTSTSTFADHKLCGFLCAVLTVNNQSDDAPRFGERCEVFGDGGEVGFRTRSGVVLGALDSPQCGGSKSKRTNKIGMVNGSVSVVHQLDAMVTRKCTEIDARVVCVDAPRVVLLVDVYLPIQVWSGWQFPRSGAVAGAVFRHLSCDWDERSSMLSSPDYCRKVCAANEKISNLSDCHVLGCTLHSRASSSSKKTLFELHEIFKTLPGVGKREMTDSPKIMPIENSGELGIWSIPDDILTKILASLGPMDLTRVSATCRHLRSLAASVMPCTKLNLFPHQRTAVEWMLHRERGAELLPHPLFVPLSTDDGFSFHVNTVSGEIVTGEAPTVKDFRGGMFCDEPGLGKTVTALSLIMKTRGSLADPPDGAQLVWCQHNGNQNCGYYEISGNNITGCTTLGKRDGCQDVSRTNDNHDSSSKRVRLTDPEQQITTLHGSCLLEENKSPVAASFKESMHSNRLTRSLSCIKKNLLFTYDEEAMNSKEKEFGEGLVKAKHASETASLASQNKLVSASYGCGQSYKLPRKTKGDGLEYSDTWIQCDACHKWRKLEDNSMANSSSAWFCSMNTDPFYQSCSVPEQNFSHSCEITHFPGFHLKGTCGGEKQNVSFFTNVLKEHYSMIDVRTRKALTWLAKIPTYKLAGMEANGIRGPILDNCSAPNGHCNAFHKIFQAFGLLKRVEKGVCKWYYPQNLNNLTFDVAALGMALCEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVSPGQLRVYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGVLRPFEAEMEEGRSRLLCLLHKCMISARKTDLQSIPECIKKVVYLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATLKNVRLSCCVSGHIKVTHAGEDIQETMDMLAQSGLDPTSGEYSSIRFILLYGGHCVRCKEWCRLPLVTPCRHLLCLDCVSIDNTKCTYPGCGKLYEMQSRLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALRGTDEGTNLNADNSNEAMHIEKGVRNVQKYSMSSTKTNLNPEKVLIFSQFLEHIHVIEQQLTVAGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRRLIHQTNLILQTKL 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01772 1241 SUPERFAMILY F-box domain 224 265 IPR036047 GO:0005515
Cca10g01772 1241 Pfam F-box-like 230 264 IPR001810 GO:0005515
Cca10g01772 1241 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 34 1227 - -
Cca10g01772 1241 Pfam SNF2-related domain 277 943 IPR000330 GO:0005524|GO:0140658
Cca10g01772 1241 Pfam Helicase conserved C-terminal domain 1140 1232 IPR001650 -
Cca10g01772 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 882 IPR027417 -
Cca10g01772 1241 Pfam CW-type Zinc Finger 532 575 IPR011124 GO:0008270
Cca10g01772 1241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 680 845 IPR014001 -
Cca10g01772 1241 SMART fbox_2 232 272 IPR001810 GO:0005515
Cca10g01772 1241 CDD SF2_C_SNF 1144 1225 - -
Cca10g01772 1241 Gene3D - 1074 1234 IPR027417 -
Cca10g01772 1241 Gene3D - 524 576 - -
Cca10g01772 1241 ProSitePatterns Zinc finger RING-type signature. 1023 1032 IPR017907 -
Cca10g01772 1241 ProSiteProfiles Zinc finger CW-type profile. 527 578 IPR011124 GO:0008270
Cca10g01772 1241 PANTHER OS01G0952200 PROTEIN 34 1227 - -
Cca10g01772 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 355 IPR027417 -
Cca10g01772 1241 CDD DEXDc_SHPRH-like 709 886 - -
Cca10g01772 1241 ProSiteProfiles F-box domain profile. 226 278 IPR001810 GO:0005515
Cca10g01772 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 1232 IPR027417 -
Cca10g01772 1241 SMART ultradead3 270 856 IPR014001 -
Cca10g01772 1241 Gene3D - 698 890 IPR038718 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01772 715 1240 RAD5 or RAD16-like Gene Family AT5G22750 25.000 9.48e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca10g01772 SNF2_N 6.1e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01772 - - gmx:100803102 2100.09