Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01766 ATGATGGAGATGTCTATTCAACATGAAAATTCTGATACCAATGAAGTATCTGGATCAAGATCTTGCCTTTATGATCTATTTTGTTCCGAAACTCCGGGTTTGGATACATTAAGTCAAAGAGAACGATGGatgtcttctgGTCCACAAAAAAGGTTAGAAAATCTGATACGTCAAGCTGGGAATAAATATTGTGCTGATTGTGGATCATTGGAACCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAATGCTCTGGTATACATAGAAGTCTAGGTGTCCACATATCAAAGGTTTTATCACTAAATCTAGACGAATGGACAGATGAACAAGTTGATGCATTGGTGAAGTTGGGTGGAAATACACTAATCAACAAGAAGTATGAAGCTTGCCTTCCAAGTAACATTAAAAAGCCAAAACCAAATTCTTCCATTGAGGAGCGCTATGATTTTATTAGGAAAAAATATGAATTCCTACAATTTTTGGATACGGAGGAGAATTTGTCTTGTCCCTTTGTACCATTTCATGCAAAAAATTCATCAAACTCACAGTACAATTCCTCAAATAACAATGCCCTACACAATAAAAGGCATTATGATAAAGTACCAACTAAAAATCGTTTTGGGAACGCCTTTCGAAATAATTGGACAAAAAAAGATTCTGATCACAAGAATGCAAAAAAGAGCAACTCATTGGTAGGTATGATTGAATTTGTTGGGCTAATCAAGGTTAATATGGTTAAAGGCATTAACCTAGCTATCCGTGATGTAATGTCTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAAACAGTGAAGACACGTGTCATTAAGAACAATTTAAACCCAATTTGGAAGGAAAGCCTAATGTTGTCAATTCCTGATGACATTCCTCCTCTTAAAATGGTTGTGCTTGACAAGGATACTTTCTCAACTGATGATTTTATGGGAGAGGTTGAAATAAACATTGAACCTTTAGTTTCAGCTGCAAAGGCATGCGAGAAATCATCAACCATTGAGTCCATACAACTTGGAAAATTGGTAGCGAATGGTGACAACACTCTTACTAAAGATGGTATCATCTTCCTTGAAGATGGGAAAGTCAAACAGGAGGTATCAGTGAGGCTACAACATGTTGAGAGAGGTATGCTAGAAATTGAGCTTGAATGTGTTCCTCTAACTCAGTAG 1197 0.3634 MMEMSIQHENSDTNEVSGSRSCLYDLFCSETPGLDTLSQRERWMSSGPQKRLENLIRQAGNKYCADCGSLEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDALVKLGGNTLINKKYEACLPSNIKKPKPNSSIEERYDFIRKKYEFLQFLDTEENLSCPFVPFHAKNSSNSQYNSSNNNALHNKRHYDKVPTKNRFGNAFRNNWTKKDSDHKNAKKSNSLVGMIEFVGLIKVNMVKGINLAIRDVMSSDPYVIISLGHQTVKTRVIKNNLNPIWKESLMLSIPDDIPPLKMVVLDKDTFSTDDFMGEVEINIEPLVSAAKACEKSSTIESIQLGKLVANGDNTLTKDGIIFLEDGKVKQEVSVRLQHVERGMLEIELECVPLTQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01766 398 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 4 398 - -
Cca10g01766 398 CDD ArfGap 52 158 - -
Cca10g01766 398 SMART arf_gap_3 49 171 IPR001164 GO:0005096
Cca10g01766 398 CDD C2_ArfGAP 241 385 - -
Cca10g01766 398 ProSiteProfiles ARF GTPase-activating proteins domain profile. 49 171 IPR001164 GO:0005096
Cca10g01766 398 Pfam Putative GTPase activating protein for Arf 50 164 IPR001164 GO:0005096
Cca10g01766 398 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 241 334 IPR035892 -
Cca10g01766 398 Gene3D C2 domain 241 398 IPR035892 -
Cca10g01766 398 ProSiteProfiles C2 domain profile. 225 340 IPR000008 -
Cca10g01766 398 SUPERFAMILY ArfGap/RecO-like zinc finger 49 164 IPR037278 -
Cca10g01766 398 SMART C2_3c 243 338 IPR000008 -
Cca10g01766 398 Pfam C2 domain 243 334 IPR000008 -
Cca10g01766 398 Gene3D Arf GTPase activating protein 35 171 IPR038508 -
Cca10g01766 398 PRINTS HIV Rev interacting protein signature 61 80 IPR001164 GO:0005096
Cca10g01766 398 PRINTS HIV Rev interacting protein signature 80 97 IPR001164 GO:0005096
Cca10g01766 398 PRINTS HIV Rev interacting protein signature 101 122 IPR001164 GO:0005096
Cca10g01766 398 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 4 398 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01766 Cca-Chr10 32635131 32644289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01766 4 273 C2H2 Transcription Factor Family AT3G07940 59.410 8.19e-111 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01766 K12486 - gmx:100799376 641.343