Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01764 ATGAAAACTACACTAACCTCCTTGCGAAGGTGTCGAGTGACCCTTAGTAGTAGGGTGCATTGCCAAATCGAAGAAAAGTTAGGTATTGTGCCATCACTGCGAATAAGACCCAAACACTATTCTTCTTCTTACTCAAAGATTTTCAAATTCCCTTTCACTCGTTCATTTTGTAACGCTACTATAATTAGGAAAATGCCGGATGTTCAAGTCCTTGTGAATGATTTTGTGAATCTTCTCAAGAAACGTAAAATTGAAGGGTCTCAGGCCACAGCAAAGCAGACAGCAGAGTTGCTCCGGTCAGTGATTTCGCAGCAGCGGCTGCCACACACAAACCAAGCCACAGCTCTGCTTAATGCAGTAAGGGCTGTTGGGGAGAAGATTATTGCTGCTAATCCCATTGAGTTGGCTGTGGGAAATATTGTCAGGCGTGTTTTGCACATTATAAGGGAGGAGGATCATTCCCTTGCAACAGCTGCTATGGCTGCTTTGGGGATGTCTGCTGGAAGTGACGATGAGGATGATGTGGAGCGAGATGATCATCCTGTTTTATctgctgctgctgttgcagctgctgcAAGAAGTACCTTGCGTCCACCATCATTGCAAACTCTTCTAGAGGGTGTGACTATTTTATCTCCTGTTCCAGTTCCACCAACACCTTCCTCAGGGGGTGAATCTGAGGGGAAAAGTAGATCTGTTGAAAAGAGTTCAAAAAGTCGGAAGTTGAAGCATGATGTCATTGAAGCTGTCAATGAACTTATTCAAGACATAACCACGTGCCACGAACAAATAGCAGAGCAGGCAGTAGAGCTTATTCATCAAAATGTGGTAATATTAACGCTAGGCAGTTCAAAAACTGTGTTGGAATTTCTTTGTGCTGCAAAGGATAAAAAAAGATCATTTAAGGTCTTTGTTGCTGAAGGTGCCCCAAGATATCAGGGGCAACTCCTTGCAAAAGAATTGGCTGATAGAGGCTTACAGACCACAGTAATTACTGATGCTGCAACTTTTGCTTTGATTTCTCGAGTGAATATGGTTATTGTTGGAGCTCATGCTGTGATGGCTAATGGTGGAGTAATTGCCCCTGTAGGGTTACATATGGTTGCACTTGCAGCTCAAAGGCATGCTGTTCCCTTTGTTGTACTTGCTGGGAGTCACAAGATGTGCCCGTTGTATCCACACAATCCTCAAGTCCTACTGAATGAGTTCAGATCCCCATCCGAGCTACTTGACTTTGGTGAATTCTCAGATTTGTTGGATTATTCAACTGGTGCTGGTTCTCTTGATGTTGTTAATCCAGTATTTGATTATGTGCCACCAAACCTTGTTAGTCTCTTTATTACTGAAACTGGAGGGCATAACTCGTCATATATGTACCGGCTGATAGCTGATTACTACTCTGCTAATGATTTGGTAATGAAACAAACACCTCCTACAGGGTGTTGA 1446 0.4225 MKTTLTSLRRCRVTLSSRVHCQIEEKLGIVPSLRIRPKHYSSSYSKIFKFPFTRSFCNATIIRKMPDVQVLVNDFVNLLKKRKIEGSQATAKQTAELLRSVISQQRLPHTNQATALLNAVRAVGEKIIAANPIELAVGNIVRRVLHIIREEDHSLATAAMAALGMSAGSDDEDDVERDDHPVLSAAAVAAAARSTLRPPSLQTLLEGVTILSPVPVPPTPSSGGESEGKSRSVEKSSKSRKLKHDVIEAVNELIQDITTCHEQIAEQAVELIHQNVVILTLGSSKTVLEFLCAAKDKKRSFKVFVAEGAPRYQGQLLAKELADRGLQTTVITDAATFALISRVNMVIVGAHAVMANGGVIAPVGLHMVALAAQRHAVPFVVLAGSHKMCPLYPHNPQVLLNEFRSPSELLDFGEFSDLLDYSTGAGSLDVVNPVFDYVPPNLVSLFITETGGHNSSYMYRLIADYYSANDLVMKQTPPTGC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01764 481 Pfam Initiation factor 2 subunit family 83 453 IPR000649 GO:0044237
Cca10g01764 481 PANTHER BNAA01G32370D PROTEIN 119 473 - -
Cca10g01764 481 PANTHER BNAA01G32370D PROTEIN 68 117 - -
Cca10g01764 481 Gene3D - 259 475 IPR042529 -
Cca10g01764 481 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 68 117 - -
Cca10g01764 481 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 119 473 - -
Cca10g01764 481 MobiDBLite consensus disorder prediction 212 240 - -
Cca10g01764 481 SUPERFAMILY NagB/RpiA/CoA transferase-like 72 470 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01764 Cca-Chr10 32596433 32603572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01764 65 473 Eukaryotic Initiation Factors Gene Family AT3G07300 76.886 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01764 K03754 - gmx:100807877 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01764 10 32596433 32603572 Cca10g01764 10 32596433 32603572 ECH