Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01752 ATGAGTATGTggacctatgatgttttcctcagttttagaggagaggatacccgctttggtttcactggtcatctctacagtgctttaatccaaagggggatcaaggctttcatggatgatgaagggcttgagaaaggggaacaaatttcacctgccattttcaatgccattgaagagtctaggatggccatcattgtgttctccaaaacctatgcatcctcaacatggtgccttgaagagcttgtcaaaatcctcaattgtaagagaaccaaggaacttgtagtttatccactgttttacaacgtggatccttcagaggtgcggcatcagagggaatgttatggccaacaattggctatgcatgacaaacagaaagtgcaaaactggagcctggctttgcatgaagctgccaatcttgcagggtggcattttaaagaaggAAAAGAGTATGAATATGAATTTATCAGACGGATTGTTGAAATGGTGGACATGTCAAAGCGCAATCTTATACCTATTGATAAATATCTAGTTGGACTCGAGTCACGTGTACCTAAAATAATATTCCGTTTGCAACTCTCTGCTCCCACTGTGATcatggtcggaatatgtggagttagtggaataggtaaaaccactctggctcaagctttgtatgattccatctgccagcaatttgaaggttcatgctttcttagtgatgttggaggaaattcagccaaatatgggttagcacatctccaagagaaaattctttccgaaatagctggtgagaatatcaaggtggtaaatgagaacaaaggaatttcaattctaattaggaagttgcaaggcaaaagggttcttttgatacttgataacgtggacgagcctgagcaattggagtatttagcaggagaatgcaattggtttggtttgggcagtagaattatcataattagcaggtacaaagatgttctagctgttcatggagttgaaaatatatatgatgtacctaaattagaaaatcatgaagctaagcaacttctAAGTTCCATGGTATTCAAGGGACCTATAACTGATTATTGTAATTCGTTTTTGGAACGTGCAATTCACTGTTCCCATGGCCTTCCATTGCTTTTGAAGGATATTGGTTCTGCTTTGTCAGAAAAAATGAAGGTTATTGGTTCTGATTTGTCAGAAACATCATTGGATGAATTGGAGATTACACTAGACAGATATgaaggagtttgtgatggagaagttcagagtatacttcgtgtgagttatgatagtttgagtgaatgtgacaggagcattttccttgacattgcatgtttcttcgttggagagccactatcatatgttgaggaaatactatcagcttgtggtttctatccagaatatagtattagcaaacttagtgaaagatctctcctatccattgctcccggtggcaggttgattatgcatgaccatatgatagacatggccaggaaaatagtgcaacaggaatcacccctgcatcctggatatcgaagtagattatggtttcctcaagatgttcttcaagttttaaatgaaaatgagGGAACGGATACAATAGAAGTTATGATGTTGGCTGACATACCCCAAGGAAATGATGTACTAAAGTTGAGCGACAGAGCCTTCAAAAATATGAAAAGCCTGAGAATACTAATTCTTAAGGATGACATATATCATGGGGTCCCCCAACATCTCCCAAATAGCTTAAGAGTTCTGTTATGGAGTGGATATCCTTCAGGGTGTTTACCACCTGATTTTTTTAAATTGCCTTCTGAGTGTCTCATTTTGGACAAGTTCAAGAATATGGCATATTTGATTAAAATGGATTTCACTGATTGTGAATTTTTGTCAGAAGTACCTGACATTTCTGAAATTCCACACTTGAGGATATTGTATCTAGATAATTGTATAAATTTGGTTAAGGTTCATGATTCTGTTGGATTTCTTGGTAATCTTGAAGAGCTGACTGCAACAGGATGCACTAGTCTAAAAACAATTCCATTAGCATTCAAGTTGGTATCTCTCAGAGAGCTCTCTTTTGGTGAGTGCTCAAGACTAGTGAGGTTTCCAGAAATATTGTGTGAGATAGAAAATTTGAAATATCTCAACTTGTGTCAAACTGCCATAGAGGAATTACCATATTCTATTGGAAATCTTAGAGGGCTTGAATCTTTAAATCTAATGGTATGTACCAGACTTGATAAGTTACCCAGTAGCATTTTTAGTCTACCAAGACTTAAGGAAATTCAAGCTGATTCATGTAGAAGGTTTGACATTTCTATTGAGTGTGAAGATCATGGACAACTGACAATAACTGTTTCTCCAAACAATGTTTATCTATATCTGAGCTCTTGCAACTTAACAACTGAACATCTTGTTACTTGTCTTAGTGGTTTTGCCAACGTTATACATTTGGACATATCTTACAATAATTTAACAGCTCTTCCAGCATGCATTAAAGAATGTATCCATTTGAAGACTCTTCTTCTAAACAATTGCAAGCAGCTTAAAGACATTTTAGAAATTCCCCCAAAATTACAAGACATAGATGCATTGAACTGCACATCATTGACATCCCAGTCATCAAGTGTACTATTGAGCCAGGCACTTCAGGCAACTGGGCAGAAAACTGTAATTCTTCCAGGGTCAAGGATTCCAAGATGGTTTGATCACTGTAGCAGCGAAAGATCCATAACTTTCTGGGGTCGTGGGAGATTCCCAGGGATTTGCTTGTGTGTTTCTTTTGGGATATTGGAAAATCCACCTTTTCATTTTAAAGTTGGATTGTGTGTAGTCATCAACGGGCACAAAAGGATTTTCTCTCAACGTTGTTACAGTTGGTCAATTGAGACAGATCATGTGTGGCTATTTGATCTAACTGCCCATATTCGTAGTGAAGATCTCAGACAGACATTTGTGGAGAGTGATTGGAATCATGTGAAGATTTCATACTGTGATTGTCAAATGGAACACAATTCATGCATACGAGTTGAGGATGGAGCAAGAAGGATGGCCATTGTGAAATGGTGTGGAATACACGTATACAGGGAATATAGTAGAATGGAGGATATCTTATTTACGAAGACCAGAAATGTACAAGAAAATAATAGAAGTAAAAGGGTTGGTAGTGAGGTTTTGGATTCGGAGAAACGTCAAAGGAAAAGTTGA 3189 0.2302 MSMWTYDVFLSFRGEDTRFGFTGHLYSALIQRGIKAFMDDEGLEKGEQISPAIFNAIEESRMAIIVFSKTYASSTWCLEELVKILNCKRTKELVVYPLFYNVDPSEVRHQRECYGQQLAMHDKQKVQNWSLALHEAANLAGWHFKEGKEYEYEFIRRIVEMVDMSKRNLIPIDKYLVGLESRVPKIIFRLQLSAPTVIMVGICGVSGIGKTTLAQALYDSICQQFEGSCFLSDVGGNSAKYGLAHLQEKILSEIAGENIKVVNENKGISILIRKLQGKRVLLILDNVDEPEQLEYLAGECNWFGLGSRIIIISRYKDVLAVHGVENIYDVPKLENHEAKQLLSSMVFKGPITDYCNSFLERAIHCSHGLPLLLKDIGSALSEKMKVIGSDLSETSLDELEITLDRYEGVCDGEVQSILRVSYDSLSECDRSIFLDIACFFVGEPLSYVEEILSACGFYPEYSISKLSERSLLSIAPGGRLIMHDHMIDMARKIVQQESPLHPGYRSRLWFPQDVLQVLNENEGTDTIEVMMLADIPQGNDVLKLSDRAFKNMKSLRILILKDDIYHGVPQHLPNSLRVLLWSGYPSGCLPPDFFKLPSECLILDKFKNMAYLIKMDFTDCEFLSEVPDISEIPHLRILYLDNCINLVKVHDSVGFLGNLEELTATGCTSLKTIPLAFKLVSLRELSFGECSRLVRFPEILCEIENLKYLNLCQTAIEELPYSIGNLRGLESLNLMVCTRLDKLPSSIFSLPRLKEIQADSCRRFDISIECEDHGQLTITVSPNNVYLYLSSCNLTTEHLVTCLSGFANVIHLDISYNNLTALPACIKECIHLKTLLLNNCKQLKDILEIPPKLQDIDALNCTSLTSQSSSVLLSQALQATGQKTVILPGSRIPRWFDHCSSERSITFWGRGRFPGICLCVSFGILENPPFHFKVGLCVVINGHKRIFSQRCYSWSIETDHVWLFDLTAHIRSEDLRQTFVESDWNHVKISYCDCQMEHNSCIRVEDGARRMAIVKWCGIHVYREYSRMEDILFTKTRNVQENNRSKRVGSEVLDSEKRQRKS 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01752 1062 Gene3D Ribonuclease Inhibitor 691 885 IPR032675 -
Cca10g01752 1062 ProSiteProfiles TIR domain profile. 4 162 IPR000157 GO:0007165
Cca10g01752 1062 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 1049 - -
Cca10g01752 1062 SUPERFAMILY L domain-like 482 869 - -
Cca10g01752 1062 SMART till_3 5 139 IPR000157 GO:0007165
Cca10g01752 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 142 IPR035897 -
Cca10g01752 1062 Pfam TIR domain 6 168 IPR000157 GO:0007165
Cca10g01752 1062 Gene3D - 1 162 IPR035897 -
Cca10g01752 1062 PRINTS Disease resistance protein signature 199 214 - -
Cca10g01752 1062 PRINTS Disease resistance protein signature 274 288 - -
Cca10g01752 1062 PRINTS Disease resistance protein signature 366 380 - -
Cca10g01752 1062 PRINTS Disease resistance protein signature 724 740 - -
Cca10g01752 1062 Pfam NB-ARC domain 182 397 IPR002182 GO:0043531
Cca10g01752 1062 Gene3D Ribonuclease Inhibitor 531 690 IPR032675 -
Cca10g01752 1062 Gene3D - 163 326 IPR027417 -
Cca10g01752 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 1049 IPR044974 GO:0006952
Cca10g01752 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01752 Cca-Chr10 32256063 32260690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01752 6 761 WRKY Transcription Factor Family AT4G12020 31.117 6.89e-73 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01752 - - gmx:100796191 1641.32