Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01747 ATGGAAATCATGGAAGAGAGAAAATTTTCTAAATTGTTGTCGGAGCTGATAGTTTTGGCTGATGAGGTTGCTTCTCTTGCTAAGAACTCTGAAATTGAGGTTGATATTTTTGCTGAGTTTGCCATGTTGGTTGAGAAATTCCCACCAATCTTCAATGACTTGAGGGACAAAAACACGGTCTTGGACAGGCCACCTATACGAAAATCTATGGAATCTCTTGAGAATGAGTTGAGGCGTGCCAAAGCTTTGACGAAAAGCTCCAATTTGAGACAACCAATCAAGCAAATTGAGGACATAACGCATGATATCGGTCGATCCTTGGGCCTTCTTCTTGTAGCCAGCCTTGAAGTGTCTGCGGATTTCAGAGAAAAGATTGGTACATTGCAAAGGCAATTGATGAATGTAAGATTTGATGCCAGTTTAAGTCTAGCTTCAAGTCCAAAATCAGAGTTGTTAGGCAGTGACATGAAGCTGACAGGAGAAATAGAAGAGGAAATAGTTTATGTTTCTATTGATGATGTTGTTTTGCAACTTAAGACCGGTAATGATGAAGAATTTGCAGTTGCACTTTTGAGACTAAAGGAGTTCATGAGGAGTGAAAGACTGGATGGTGGCTTGATCAATGAGGAAGCAACTATTTCCATTCTTTTCAATCGTCTAGGCTCGTGTAAGGCAGAGAATAGGTTGGCGATCATTCGATTGCTAAGAAGTATTGCTTATGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGAGTTTTTATCAGCAGTGGTGAAGTCGCTGACAAGAGATTCAGAAGAGAGGAAGGAAGCAGTGGGGCTGTTGGTAGACCTCTCTGACATTCAGGCAGTTCGACGGCGAATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTGCTATACTTAATGGGGATGACCCTGATGCCTCACATGATGCGGCAAAATTGTTGGATATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTGGTGCAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCAACAGCACTTTCTAGGTTGGAGCTCACTGATCACAGCAAACTTTCCCTTGGAGAGGATGGGGCAATTGAGCCCCTGGTCAATATGTTTAGTACTGGGAAACTTGAGTCCAAGTTATCAGCTTTAAATGCACTACAAAATCTGTCTAGCTTGGCAGAAAATGTGCAGCTTTTGATCAGATCCGGTATTGCAGGATCTCTCTTACAACTTCTTTTCTCAGTAACATCTGTGCTCATGACTTTGCGCGAGCCTGCATCAGCTATTCTTGCAAGAATTGCTCAGTCAGAATCCATTCTTGTTAATGAAGATGTGGCTCAACAGATGCTTTCACTTTTGAATCTTTCCAGCCCTATAATTCAAGGTCACCTATTGGAGGCTCTGAATAACATAGCTTCCCATCCTGGTGCGTCCAAAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTCTTGCCCTTTCTGAAGGAAAACACCACCAAAGTCAGGATTAAGGTGTTGCATTTGCTGTACACTCTCTCTAAAGATCTAACAGATGAGTTGACTGAACATCTGGATGAAACTCATCTTTTCAACATTGTTAATATAGTCTCAACATCAACATCAGAGAGTGAAAAGGCTGCGGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAATAAAAAAGTGACAGATATACTGAAGAGGGCAAATTTGCTTCCCATTTTAATATCCATTATGTATTCTATCACAGGAAGTAATTCACCCACAACAAATAGATTAGCAGAGAGCATTGCAAGTGTTATTATTCGCTTCACAAATTCCTCTGACAAGAAATTACAACTTCTTTCAGCCGAACACGGGGTGATTCCTTTGCTTGTAAAACTGCTATCAAGTGGTTCACCAATCACAAAATCTAGGGCTGCAATCTCTCTGGCTCAACTATCTCAGAATTCTCTGTCTCTTAGGAAGTCTAGAAAGTCAAGGTGGTTGTGCGTTCCACCGTCAGCGAATGCATATTGTGAAGTTCATGATGGATATTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCTGGTGCTGTTTCTCCCCTTATCCAACTGTTGGAAGATACTGAGAAAGAAGTGGTTGAAGCTGCTTTGTGTGCTCTCTCTACTCTTCTGCTAGATGAAATATGGGAAGGTGGTGTCAACTCCATTGCCAAATTGTCAGGTGTGCAGGCTATTATAAAAAGTCTAGAAGTTAGGGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAGGTTGCAGAACATAGAGTAAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCTGAGCTGGAACTGCTGCAATCTCAATCAAGTTACTTTTGA 2493 0.4108 MEIMEERKFSKLLSELIVLADEVASLAKNSEIEVDIFAEFAMLVEKFPPIFNDLRDKNTVLDRPPIRKSMESLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSLGLLLVASLEVSADFREKIGTLQRQLMNVRFDASLSLASSPKSELLGSDMKLTGEIEEEIVYVSIDDVVLQLKTGNDEEFAVALLRLKEFMRSERLDGGLINEEATISILFNRLGSCKAENRLAIIRLLRSIAYGNDEKKEKMVDIEFLSAVVKSLTRDSEERKEAVGLLVDLSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASHDAAKLLDILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLSLGEDGAIEPLVNMFSTGKLESKLSALNALQNLSSLAENVQLLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASKVRSKMKEKGALQLLLPFLKENTTKVRIKVLHLLYTLSKDLTDELTEHLDETHLFNIVNIVSTSTSESEKAAAVGILSNLPASNKKVTDILKRANLLPILISIMYSITGSNSPTTNRLAESIASVIIRFTNSSDKKLQLLSAEHGVIPLLVKLLSSGSPITKSRAAISLAQLSQNSLSLRKSRKSRWLCVPPSANAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEDTEKEVVEAALCALSTLLLDEIWEGGVNSIAKLSGVQAIIKSLEVRDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01747 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 709 736 IPR000225 GO:0005515
Cca10g01747 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 830 - -
Cca10g01747 830 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 1 830 - -
Cca10g01747 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Cca10g01747 830 SUPERFAMILY ARM repeat 355 784 IPR016024 -
Cca10g01747 830 SMART arm_5 698 738 IPR000225 GO:0005515
Cca10g01747 830 SMART arm_5 324 364 IPR000225 GO:0005515
Cca10g01747 830 SMART arm_5 242 281 IPR000225 GO:0005515
Cca10g01747 830 SMART arm_5 491 531 IPR000225 GO:0005515
Cca10g01747 830 SMART arm_5 742 782 IPR000225 GO:0005515
Cca10g01747 830 SMART arm_5 365 405 IPR000225 GO:0005515
Cca10g01747 830 SMART arm_5 626 666 IPR000225 GO:0005515
Cca10g01747 830 Gene3D - 690 828 IPR011989 -
Cca10g01747 830 Coils Coil 70 90 - -
Cca10g01747 830 Gene3D - 206 332 IPR011989 -
Cca10g01747 830 Pfam Armadillo/beta-catenin-like repeat 704 736 IPR000225 GO:0005515
Cca10g01747 830 SUPERFAMILY ARM repeat 171 427 IPR016024 -
Cca10g01747 830 Gene3D - 333 677 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01747 Cca-Chr10 32144665 32149122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01747 178 830 U-box Gene Family AT1G76390 29.614 4.78e-51 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01747 K08332 - gmx:100791453 1382.47