Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01744 ATGGAAAACCATCATAACACAACAATGTTAATAACGGTGCTCAGTTTCTTCTTCTACCTCATTTCCATGTTATCTATACAAGGCACCCTCTCTCTTACTCCAAATGAGTCAATCCAAGGCAACAAGACCATGGTTTCAGCATCTGGAACTTTTGAAGCAGGGTTCTTCAACGTTGGAAATTCACAAGGCCAATACTTTGGTATATGGTACAAGAACATTTCACCAAGGACTATTGTGTGGGTTGCCAACAGAGATGCCCCAGTGAAAAGCTCAACAGCATTTCTCACAGTAACAGATCAAGGGGATCCTGTTATTCTTGATGGATCAAGGGTCACTGTGTGGTTCTCCAACTCATCAAGAGTTTCTAAGAAACCAATCATGCAGCTTTTGGATTCAGGAAACCTTGTTGTGAAAGATGAAGATAGTAGCAAAGGGAAATTCTTGTGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTAGGACAAACTTAGTCAGTGGTCCTAATAGGTCTCTCACATCATGGAAAAACCAGGAAGATCCTGGTTCTGGTGAGTTTTCATATCACATAGATGCTCATGGCTTTCCTCAGCTGGTTACTACAAAGGGAAAAAGATTGTTTAGCAGAGGAGGGTCATGGAATGGCTTTGTTTTTGGTGGAGTTTCGTGGCGAAGGATGCTTAGACTCTTCAATTTTACTCTAGTGGTTAATGACAGGGAAGTTATTTACCACTATGAAAACTTGAATGATGACACTGTTAGTAGGTTAGTGCTCAATCCATCAGGCTTTGCACAACGTTTGATATGGTCTCAGAACCGTGGTTGGGAGGCTATATCTACTCGTCCCGCGGATCAGTGTGATTATTATGCCTTTTGTGATGTCAATTCTGTGTGTAATATTACTAATTCTCCAAAATTATGTGCATGCTTGGAAGGTTTTGTACCCAAATTCCATGAGAAGTGGAGTTCATTAGATTGGTCTGGTGGGTGTGTTAGAAGAGTAAACTTGAGTTGTGGTGGTGATAAGTTTCGGAAGTACACGGGAATGAAGTTCCCAGACACTTCTTCTTCTAGGTATTCCAATGACTTGAGCCTTGAGAATTGTAAGAAATTGTGTTTGGAAAACTGCTCTTGTACAGCGTATGCAAATATAGATGTCAATGGGAGAGGGTGCTTGCTTTGGTTTGATAACATTGTGGATATGACCAAACACACAGACCAAGGACAAGATATTTACATAAGACTTGCAGCTTCAGAGTTTGATCATAGAGGGAATAACCAGAGCTTTGATAACAAGAAGCTTGCAGGGATACTAGTAGGCGTTGTAGCATTCATCTTGGTACTTGGATTGGCCACAATCACATATATAAAGAGGAAGAAGCTCGCAGAGGGAGGGATACTAAAAATATTTCACCAGAAGTACAAAAGGGATAAGGAAGACGTGGAGTTAGCAACAATATTTGATTTTTCAACCATCTCTAATGCCACAAATAATTTTTCAGACAGTAACAAGTTAGGAGAAGGTGGCTTTGGACCAGTATACAAGGGTGTATTGAAAGATGGACAAGAGATTGCGGTCAAGAGACTTGCAAAAACTTCTGAACAAGGAGCAGAGCAGTTCAAAAATGAAGTGATGTTGATGGCAAAACTTCAACACCGAAATCTTGTGAAACTTCTCGGTTGTTCTATTCACCCAAAAGAAAAGCTATTGATCTACGAATACATGTCCAACAGAAGCTTGGATTACTTTATTTTTGGTTTGAAATTTCACACACTGTTATTTTTGGCTTTTCGTTTGACTTTTGCTTATGTAGTTGTTACACCGACTAAAACTAAAAAGTGA 1857 0.3985 MENHHNTTMLITVLSFFFYLISMLSIQGTLSLTPNESIQGNKTMVSASGTFEAGFFNVGNSQGQYFGIWYKNISPRTIVWVANRDAPVKSSTAFLTVTDQGDPVILDGSRVTVWFSNSSRVSKKPIMQLLDSGNLVVKDEDSSKGKFLWESFDYPGDTFLAGMKLRTNLVSGPNRSLTSWKNQEDPGSGEFSYHIDAHGFPQLVTTKGKRLFSRGGSWNGFVFGGVSWRRMLRLFNFTLVVNDREVIYHYENLNDDTVSRLVLNPSGFAQRLIWSQNRGWEAISTRPADQCDYYAFCDVNSVCNITNSPKLCACLEGFVPKFHEKWSSLDWSGGCVRRVNLSCGGDKFRKYTGMKFPDTSSSRYSNDLSLENCKKLCLENCSCTAYANIDVNGRGCLLWFDNIVDMTKHTDQGQDIYIRLAASEFDHRGNNQSFDNKKLAGILVGVVAFILVLGLATITYIKRKKLAEGGILKIFHQKYKRDKEDVELATIFDFSTISNATNNFSDSNKLGEGGFGPVYKGVLKDGQEIAVKRLAKTSEQGAEQFKNEVMLMAKLQHRNLVKLLGCSIHPKEKLLIYEYMSNRSLDYFIFGLKFHTLLFLAFRLTFAYVVVTPTKTKK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01744 618 CDD PAN_AP_plant 339 421 - -
Cca10g01744 618 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 597 - -
Cca10g01744 618 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 186 IPR036426 -
Cca10g01744 618 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Cca10g01744 618 SUPERFAMILY Protein kinase-like (PK-like) 486 596 IPR011009 -
Cca10g01744 618 ProSiteProfiles PAN/Apple domain profile. 343 421 IPR003609 -
Cca10g01744 618 SMART ntp_6 343 420 IPR003609 -
Cca10g01744 618 Pfam S-locus glycoprotein domain 214 322 IPR000858 GO:0048544
Cca10g01744 618 Pfam Protein tyrosine and serine/threonine kinase 507 589 IPR001245 GO:0004672|GO:0006468
Cca10g01744 618 Pfam PAN-like domain 343 406 IPR003609 -
Cca10g01744 618 Gene3D Hepatocyte Growth Factor 342 422 - -
Cca10g01744 618 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 22 597 - -
Cca10g01744 618 ProSiteProfiles Protein kinase domain profile. 504 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01744 618 SMART tyrkin_6 504 618 IPR020635 GO:0004713|GO:0006468
Cca10g01744 618 SMART blect_4 35 155 IPR001480 -
Cca10g01744 618 Gene3D - 26 152 IPR036426 -
Cca10g01744 618 CDD B_lectin 35 155 IPR001480 -
Cca10g01744 618 Pfam D-mannose binding lectin 77 181 IPR001480 -
Cca10g01744 618 Gene3D Phosphorylase Kinase; domain 1 463 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01744 Cca-Chr10 32071917 32076008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01744 429 590 Receptor kinase-like Gene Family AT4G23190 46.429 1.93e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01744 S_locus_glycop 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01744 - - gmx:100803275 979.933