Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01743 ATGGAGATCCAAAAGGTGCTCTTGCATATGATGTTCACTATTTTCTTTTGCATCATACCCACTTTCTCCAATCAACTCACAGATACTATTACTCCAAATCGCTCCATCCAATATTACGAGACCCTGAAGGAAGACGCAGGAATCTTTGAAGCAGGATTTTTCAACCTTGGAAACTCAACAAGTGGTTATTTTGGTATATGGTACAAGACCATATCACCCAGGACTATTGTGTGGGTTGCCAACAGGAATATCCCAGTACAAAACTCATCAACAGCAGTTCTGAAACTCACTCATCAGGGAAACCTTGAGATTCTTGATGGCTCCAAAGGCATAATCTGGTCCTCAAACTCATCAAGAAACGCAGAGAAACTGAAACCAGTTGTGCAGCTTTCAGATTCAGGAAACCTTGTCATGAAAGATGCTGAGACGAACCTCTTGTGGCAAAGCTTTGATCATCCTGGTGACACCATGCTCGCGGGAATGAAACTGAAGAGCAACTTTGTCACTGGTCCATATACATATCTCACGTCTTGGAGAAACGATGATGATCCTGCTGAAGGTGATTTTTCATGTGGAATCGATGCAAGTGGCTTTCCTCAACTAGTTACTAAACAAGGAGCAAAAGTTTTGTACAGTTCGGGGCCGTGGAATGGCTATCTCTTCAGTGGAGTTTCATGGGACAGAATGCGTAAAATTTTGAATTTCTCTTTAGAGTTCAGTGACAAAGAAGTTTCTTTTGGATACGAGACATTGAAAAGCTCAACGCCTACTAGAACAGTGCTGAGGATCAATCCAACAGGAGGCACAGGCCGTTTCCAATGGTCAAACCAAAGACAAGCTTGGGATACTGTAAACACTCAGCCTAAAGACCAGTGTGAATATTATGCAAGCTGTGGTGTCAATTCTAACTGCAATATTGATAATCTTCCAGTATGTGAATGCTTGCAAGGTTTCATACCAAAGTTTAAAGAAAAGTGGGGTTCCCAAGATTGGTCTGGTGGGTGTGTGAGAAGAACGAAATTAAGTTGTGATAATGGAGATGGGTTTGAGAAGTACACAGGAATGAAGTTGCCAGACGCGTCTTCTTCGTGGTTTAACAAGAGCTTGAGCCTTGAGGAATGTAAGAGATTGTGTTTGAGAAACTGCTCTTGTACTGCATATGCAAATTTAGATATCAGAGATGGTGGGAGTGGCTGCTTGCTTTGGTTTGGTAACATTGTGGACTTGAGAACTGTGCCAGACCGTGGACAAGAAATTTATATACGACTAGCCTTTTCTGATCTGGATCTCAGAAGGAATAAAAGGAACTTGAATAGAAAGAAGCTTGCAGGGATTCTAGCAGGACTTGTTACATTCATAACAGGACTAACAATTCTTGTGTGTGCCACTTCAAAATTTAGAAAGAGGATGAAGCTAGTACCCAAGCCAGTAGGAGTTGTTAAAGCAGTGATTCGCTGGAAGCACATGATGGAGAAGGAAGACGATAACTTACCAACAATATTTGATTTTTCAACCATTGATATTGCCACAAATCACTTTTCTAACATAAACAAGATAGGAGAAGGTGGTTTTGGAACGGTATATAAGGGCACATTGCTAGATGGACAAGAGATTGCAGTCAAGAGGCTTTCTAAAACTTCAAGACAAGGAATTGAGGAGTTCAAAAATGAAGTAAAGTTGTTGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACTTGAAGAAAAGTTGTTGATATACGAATTCATGCCCAACAGAAGCTTGAATTACTTTATCTTTGATACAATGCGAGCTAAATTATTGGATTGGACTAAGCGTTTGGAAATTATTGAGGGAATTGCTCGAGGACTTATGTATCTTCATCAAGATTCTAGACTAAGAATCATACATAGAGATCTCAAAACAAGTAATATTCTTCTTGATAACAACATGATTCCAAAGATATCAGATTTTGGGTTAGCAAGAGCGTTTGGAGGAGATCAAGCTGAGGCAAATACAAATAGAGTGATGGGAACATATGGCTATATGCCTCCAGAATATGCAATGCATGGATCTTTCTCAACTAAATCTGATGTTTTCAGTTTTGGTGTAATTGTTATTGAGATAATTAGTGGAAGAAAAAATCGTGGATTTCGTGACCCTCACCATCATCAACTTAACCTTCTAGGCCATGCATGGAGGCTATGGATTGAAGAAAGGCCAATGGAGTTAATAGATGACATATTAGATGATCCAGCCACTCCACATGAAATATTGAGATTTATTCATGTGGGTTTACTATGCGTACAACAAAATCCAGAAAATAGACCAAACATGTCATCTGTGGTTTTAATGTTGAATGGTGAAAAGTTACTCCCAAATCCAAGCCAACCTGGGTTCTACACAGAAAACGATAATATAATTGACACTTTTGGATCTTATTTAAAGCACTACCAAAGGTGTTCAGTAAATGAAATTTCAATCTCATTGTTAGAGGCTCGATAA 2502 0.3933 MEIQKVLLHMMFTIFFCIIPTFSNQLTDTITPNRSIQYYETLKEDAGIFEAGFFNLGNSTSGYFGIWYKTISPRTIVWVANRNIPVQNSSTAVLKLTHQGNLEILDGSKGIIWSSNSSRNAEKLKPVVQLSDSGNLVMKDAETNLLWQSFDHPGDTMLAGMKLKSNFVTGPYTYLTSWRNDDDPAEGDFSCGIDASGFPQLVTKQGAKVLYSSGPWNGYLFSGVSWDRMRKILNFSLEFSDKEVSFGYETLKSSTPTRTVLRINPTGGTGRFQWSNQRQAWDTVNTQPKDQCEYYASCGVNSNCNIDNLPVCECLQGFIPKFKEKWGSQDWSGGCVRRTKLSCDNGDGFEKYTGMKLPDASSSWFNKSLSLEECKRLCLRNCSCTAYANLDIRDGGSGCLLWFGNIVDLRTVPDRGQEIYIRLAFSDLDLRRNKRNLNRKKLAGILAGLVTFITGLTILVCATSKFRKRMKLVPKPVGVVKAVIRWKHMMEKEDDNLPTIFDFSTIDIATNHFSNINKIGEGGFGTVYKGTLLDGQEIAVKRLSKTSRQGIEEFKNEVKLLATLQHRNLVKLLGCSIQLEEKLLIYEFMPNRSLNYFIFDTMRAKLLDWTKRLEIIEGIARGLMYLHQDSRLRIIHRDLKTSNILLDNNMIPKISDFGLARAFGGDQAEANTNRVMGTYGYMPPEYAMHGSFSTKSDVFSFGVIVIEIISGRKNRGFRDPHHHQLNLLGHAWRLWIEERPMELIDDILDDPATPHEILRFIHVGLLCVQQNPENRPNMSSVVLMLNGEKLLPNPSQPGFYTENDNIIDTFGSYLKHYQRCSVNEISISLLEAR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01743 833 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 21 832 - -
Cca10g01743 833 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Cca10g01743 833 Pfam PAN-like domain 343 409 IPR003609 -
Cca10g01743 833 Gene3D Transferase(Phosphotransferase) domain 1 589 792 - -
Cca10g01743 833 Pfam Protein tyrosine and serine/threonine kinase 516 783 IPR001245 GO:0004672|GO:0006468
Cca10g01743 833 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Cca10g01743 833 ProSiteProfiles Protein kinase domain profile. 513 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01743 833 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Cca10g01743 833 SMART serkin_6 513 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01743 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Cca10g01743 833 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 832 - -
Cca10g01743 833 CDD STKc_IRAK 519 787 - -
Cca10g01743 833 Gene3D Phosphorylase Kinase; domain 1 486 588 - -
Cca10g01743 833 SMART blect_4 33 153 IPR001480 -
Cca10g01743 833 SMART ntp_6 344 423 IPR003609 -
Cca10g01743 833 ProSiteProfiles Bulb-type lectin domain profile. 27 151 IPR001480 -
Cca10g01743 833 SUPERFAMILY Protein kinase-like (PK-like) 496 793 IPR011009 -
Cca10g01743 833 Pfam D-mannose binding lectin 75 179 IPR001480 -
Cca10g01743 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 217 IPR036426 -
Cca10g01743 833 Gene3D Hepatocyte Growth Factor 340 421 - -
Cca10g01743 833 Gene3D - 21 150 IPR036426 -
Cca10g01743 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Cca10g01743 833 CDD B_lectin 39 153 IPR001480 -
Cca10g01743 833 CDD PAN_AP_plant 339 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01743 Cca-Chr10 32036083 32040828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01743 444 800 Receptor kinase-like Gene Family AT4G23190 52.846 1.93e-120 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01743 PK_Tyr_Ser-Thr 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01743 - - gmx:100819820 1219.14