Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01736 ATGGCAGCAGGGGTAGTTGGTGGGGCATTTCTCTCGGCCTCCCTTCAAGTGACTTTTGACAGGTTGGCTTCAAGAGACATCTTAAACTACTTCCATGGAAGGAAACTCAAAGATGAGATGCTCAAAAAGCTAGGAATTGCATTGAACTCTATCAACCAAGTGTTGGAGGATGCAGAGGAAAGGCAGTATAGAAGCCCTAATGTGATGAAATGGCTTGATGAGCTTAAAGAGGCTATATATGAGGCAGAGTTGCTTTTTGATGAAGTTGCTACCGAAGCATTGCGACTGAAGCTGGAAGCTCAATTTCAGCCTGCTACTAGCAAGGTGCGAGGATTCCTCACAGCTTTTATTAATCCATTTGACAAAGAAATTGCATCTAGGGTTAAAGAAGTATTAGAGAACATAAAATATTTGGCTGAACAAACGGATATGCTAGGATTGAGAAAGGGAACTTGTGCTGGCCATGAAGTTGGATCCAGTTGGAAACTCTCCAACAGATTGCCAACTACATCCTTGGTGGATGAATCTAGCATATGTGGTAGAGAGGGTGATAAAGAGAAAATAATCAAAATTTTAGTTTCAGATAATGTCACATGCAATCAAGTGCCAATTATTAGTATAGTGGGCTTGGGAGGGATCGGTAAGACCACCCTTGCTCAGCTTGTGTATAATGACCAAAAGATACTGGACCAATTTGACCTTAAAGCTTGGGTCTATGTTTCACAAGATTTTGATGTTGTTGCTGTCACAAAAGCAATTCTAAAGGCACTTGGGTCATTATCTGAGGAAGAAAGAGACTTGAATTTGCTTCAAATTGAACTGAAGCAGAGGCTGATGGGGAAGAAATTTTTGCTTGTTTTAGATGATGTTTGGAATGAAAACTATTCGAGTTGGGAGGCACTACAAATCCCCTTCATTTTTGGATCTTCAGGAAGTAGGATTCTTGTTACCACACGTACTAAGAAGGTAGCATCAGTCATGAACTCCTCCCAATTACTTCATTTAAAGCCATTGGAGAAAGAATATAGTTGGAAGCTGTTTGCTAATTTTGCATTTCATGACAAGGATACCAGAAAATATCCAAATCTTGTATCAGTTGGCAGTAAAATTGTGGAGAAGTGTGGAGGATTGCCTTTAGCTATAAGAACATTGGGAAATATCTTGCGAGCAAAATTTTCCCATTACGAATGGGTTAAGATATTGGAAAGTGATATATGGCACTTACCAGAGAATGATAGCAGTATTAATCCCGCTTTGAGATTGAGTTACCACAATCTTCCTTCCTATCTGAAGCGCTGTTTTGCTTATAGCTCCATATTTCCAAAAGGTTATGAGTTTGATAGCGATCAGTTAATCAAGTTGTGGATGGCAGAAGGTTTCTTGAGTTGCTGCCAAATAAGCAAGAGTGAAGAAGAGTTAGGTAGTGAGTTCTTTAATGAACTAGTGGCAAGGTCATTTTTCCAACAATCAAGACGCCATGGTTCTCGCTTCACTATGCATGATCTTCTTAATGACTTGGCAAAATCTGTGTCAGGAGATTTTTGTTTACAAATTGAGGGTAATTTGGTGCAAGATATACCTAATAGAACGCTTCATATTTCATGCGCTCACAAATTTAACCTTGATATATTTTTGGAGCATATTTGCAAGTGTAACAGATTGCGTTGTCTTATGGCACTTGAATCATGTGAATTTGGCAGGGGAGACTTGATGAACAGCAATGCACAACGTGTTTTGTTTTCTAGAATTAAATATTTGTGTGTGTTATCCTTCAACAATTGTCTTCTCACAGAGTTAGTTGATGAGATAAGCAATTTAAAGCTTTTGCGCTATCTAGACCTTTCAAACACCAAGATTAAAAAGTTGCCTGACTCCATTTGTATGCTGCATAATTTGCAGACACTATTACTAGAATGGTGCTATCATTTGACAGAGCTCCCCTTAGATTTTCACAAACTTGTTAATTTGCGTCATCTTGATGTGCGTATGAGTGGAATAAATAAAATGCCAAAGCACATAGGAGGGCTGATACATCTTAAAACCCTGACTTGTTTTTACATCAGCAAGCTTAGTGGGTTTGATATTAAGGAGTTGGGGAATCTCAACCATCTTCAAGGAACACTCTCAGTGTTGAAGTTAGAAAATGTCACTGATCCTGCAGATGCCATGGAGGCTAATATGAATGATAAAAAGCATTTAGAAGAATTGGTGTTGAATTGGGGTGACAAATTTGGAAGGTGCAATGAAAATGAAGACTCAATAACGGAAAGGCATGTGTTGGAGGCTCTTCAACCAAATGGGAACTTGAAAAGGCTTACTGTTTTACGTTATGATGGAACTAGCTTTCCAAGTTGGTTTGGTGGATCTCATTTACCCAATTTAACATCCATTTCATTGACTAAAAGTAAATTCTGTTTTATGTTGCCACCATTTGGGAAGCTCCCCTCTCTGAAGGAGCTCTCTATTTCATGCTTTTACTCAGTAGAGGTCATTGGTCCGGAGTTTTATGGTAAAGATTCCTCAAATACTCCATTCAAATCTCTTGAAATTCTGAAGTTCGAGGAAATGAGTGCATGGAAAGAATGGTGCAGTTTTGAAGGTGAGGGTTTGTCTTGTCTTAAAGAGCTTTCCATAAAGCGCTGTCCTTGGTTGAGAAGGGCCCTGCCTCAACACCTTCCTTGTTTGCAGAAATTGGAAATTTGTGAGTGCCAACACTTAGAGGATTCACTTCCTGAGGCTGCAGGTATTCATGAGCTAGTGTTGCGTGGATGTGAGAAGTTTTTGCTGAAAGATTTGTCATCCAGCTTGAAAAAGGCCACAATTTGTGGAACTCGTGTCATTGAGTCCTCCCTCGAGCAAATTCTGCTCCTTAATGCCTTTCTTGAAGAGTTGAAATTACATGACTTCGATGGTCCAAATCTAAAATTGTCCTCTTTGGATATGCATAGACAAGATTCTCTTAGCACTCTTACTATAACAAGCTGGTACTCCTCCTCGTTGCCTTTTGCACTAGACATGTTTGCCAATCTTCATTCTCTACATTTCTATGATTGTCCACAGCTTGAGTCATTTCCAGAGGGGGGTTTGCCTTCAAGCCTGTGCAAACTCGAAATTGAGGATTGCCCCAAACTGGTTGCATCTAGGGAGGAGTGGGGATTGTTCAAACTTCATTCTTTGAAAGAGTTGAGGATTAGTGATGACTTTGAAAATGTGGAGTCTTTCCCAGAGGAGGGGTTGCTACCACCCACTCTCAGTGATCTATATTTAATTGGATGTTCAAAGCTAACAACAACAAAGTTTTCTCCACCTCAAATCTCTCAAATCCTTCTATATTCTAATATGCCCTCGTCTTGA 3354 0.3965 MAAGVVGGAFLSASLQVTFDRLASRDILNYFHGRKLKDEMLKKLGIALNSINQVLEDAEERQYRSPNVMKWLDELKEAIYEAELLFDEVATEALRLKLEAQFQPATSKVRGFLTAFINPFDKEIASRVKEVLENIKYLAEQTDMLGLRKGTCAGHEVGSSWKLSNRLPTTSLVDESSICGREGDKEKIIKILVSDNVTCNQVPIISIVGLGGIGKTTLAQLVYNDQKILDQFDLKAWVYVSQDFDVVAVTKAILKALGSLSEEERDLNLLQIELKQRLMGKKFLLVLDDVWNENYSSWEALQIPFIFGSSGSRILVTTRTKKVASVMNSSQLLHLKPLEKEYSWKLFANFAFHDKDTRKYPNLVSVGSKIVEKCGGLPLAIRTLGNILRAKFSHYEWVKILESDIWHLPENDSSINPALRLSYHNLPSYLKRCFAYSSIFPKGYEFDSDQLIKLWMAEGFLSCCQISKSEEELGSEFFNELVARSFFQQSRRHGSRFTMHDLLNDLAKSVSGDFCLQIEGNLVQDIPNRTLHISCAHKFNLDIFLEHICKCNRLRCLMALESCEFGRGDLMNSNAQRVLFSRIKYLCVLSFNNCLLTELVDEISNLKLLRYLDLSNTKIKKLPDSICMLHNLQTLLLEWCYHLTELPLDFHKLVNLRHLDVRMSGINKMPKHIGGLIHLKTLTCFYISKLSGFDIKELGNLNHLQGTLSVLKLENVTDPADAMEANMNDKKHLEELVLNWGDKFGRCNENEDSITERHVLEALQPNGNLKRLTVLRYDGTSFPSWFGGSHLPNLTSISLTKSKFCFMLPPFGKLPSLKELSISCFYSVEVIGPEFYGKDSSNTPFKSLEILKFEEMSAWKEWCSFEGEGLSCLKELSIKRCPWLRRALPQHLPCLQKLEICECQHLEDSLPEAAGIHELVLRGCEKFLLKDLSSSLKKATICGTRVIESSLEQILLLNAFLEELKLHDFDGPNLKLSSLDMHRQDSLSTLTITSWYSSSLPFALDMFANLHSLHFYDCPQLESFPEGGLPSSLCKLEIEDCPKLVASREEWGLFKLHSLKELRISDDFENVESFPEEGLLPPTLSDLYLIGCSKLTTTKFSPPQISQILLYSNMPSS 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01736 1117 SUPERFAMILY L domain-like 498 908 - -
Cca10g01736 1117 Coils Coil 41 61 - -
Cca10g01736 1117 PANTHER DISEASE RESISTANCE PROTEIN RP 17 907 IPR044974 GO:0006952
Cca10g01736 1117 SUPERFAMILY RNI-like 814 1097 - -
Cca10g01736 1117 Gene3D Ribonuclease Inhibitor 961 1117 IPR032675 -
Cca10g01736 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 436 IPR027417 -
Cca10g01736 1117 Gene3D - 417 510 IPR036388 -
Cca10g01736 1117 PRINTS Disease resistance protein signature 204 219 - -
Cca10g01736 1117 PRINTS Disease resistance protein signature 277 291 - -
Cca10g01736 1117 PRINTS Disease resistance protein signature 374 388 - -
Cca10g01736 1117 PRINTS Disease resistance protein signature 604 620 - -
Cca10g01736 1117 Gene3D Ribonuclease Inhibitor 557 941 IPR032675 -
Cca10g01736 1117 Gene3D - 20 130 - -
Cca10g01736 1117 Pfam Rx N-terminal domain 10 102 IPR041118 -
Cca10g01736 1117 Pfam NB-ARC domain 182 402 IPR002182 GO:0043531
Cca10g01736 1117 Gene3D - 161 333 IPR027417 -
Cca10g01736 1117 PANTHER OS05G0414200 PROTEIN 17 907 - -
Cca10g01736 1117 ProSiteProfiles Leucine-rich repeat profile. 608 629 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01736 Cca-Chr10 31876863 31881032 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01736 205 510 WRKY Transcription Factor Family AT5G45050 25.714 9.75e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01736 - - gmx:100777510 1816.59