Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01726 ATGGGTTCTAATTATGGAGAGAAAGACAATGCATGGGTCTGTGCAATGAATAATTTGCTTGGATCAGTATATTCTGGGGTATTGAAAGCTGCCGTTGAACTCAACTTGTTTGATATCATAGCAAAGGCATCAGTAGTTGGTGTCTCAGCATCTGATATTGCTACACAGCTTCCAACACAACACCCAGAATTGGCTGGCAGGCTTGACCGCATGTTATGTTTATTAGCGAGTAACTCTCTTCTTATTTGTTCCACTCGCACAAATAAACATGGTAACATTGAAAGGTTTTACAAGCTATCCCCTGCTGGTAAATACTTCaatgttctcctttcATTACTTGATTTTTATGAAATTGTTGTGTTTTATGTTAGGAATAATTTTAAGGAGGTACTTCTGGACTTTGACAAGGGATTATTTGAGAAAGTTCACGGTGTGCCTATTTATGGATACATCCAGTCAGATCCGACTTTGAGTAATGTTTTTAATAAGGCAATGTCTAATTTAAGTTTAATCACGATGAACAAGATACTTGAAACATATGAAGGATTTGAAGAAATGTCATTGCTAGTTGATGTGGGCGGTGGCATTGGCCAAAATTTGAATATGATAATCTCCAAGTATCCTTCTATAAATGGTATTAACTTTGATCTACCCCATGCGATACGCAAAGCTCCAATTTATCCAGGGATAAAGCATGTAGAAGGAGATATGTTTAAAAGTGTTCCTAAAGGTGATGCTATATTATTGAAGGTTGTATTGCACAATTGGTCGGATGAAAAATGTATTAAAATTTTAAGTAATTGCTACGAAGCTTCGCCACAAAATGGGAAGGAAATCGTCGTGGAGTATATAGTTCCTGAAGAAATTCACTCCACCGATGTAGATAAAATGGTGTTACGTGTATTGGCTTGCATGCCTTGCGAATCTTGGTCATGTCAAGTTCGATTGTCTGGTGGGATTGTTGCTACAAAAGATCCATGTCCCTTGCTTATAGTGGGGATGTATGACGACGACGTGGATGATTTCTAG 1029 0.3732 MGSNYGEKDNAWVCAMNNLLGSVYSGVLKAAVELNLFDIIAKASVVGVSASDIATQLPTQHPELAGRLDRMLCLLASNSLLICSTRTNKHGNIERFYKLSPAGKYFNVLLSLLDFYEIVVFYVRNNFKEVLLDFDKGLFEKVHGVPIYGYIQSDPTLSNVFNKAMSNLSLITMNKILETYEGFEEMSLLVDVGGGIGQNLNMIISKYPSINGINFDLPHAIRKAPIYPGIKHVEGDMFKSVPKGDAILLKVVLHNWSDEKCIKILSNCYEASPQNGKEIVVEYIVPEEIHSTDVDKMVLRVLACMPCESWSCQVRLSGGIVATKDPCPLLIVGMYDDDVDDF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01726 342 PIRSF O-mtase 3 310 IPR016461 GO:0008168
Cca10g01726 342 SUPERFAMILY "Winged helix" DNA-binding domain 8 106 IPR036390 -
Cca10g01726 342 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 16 342 IPR016461 GO:0008168
Cca10g01726 342 PANTHER O-METHYLTRANSFERASE 22 300 IPR016461 GO:0008168
Cca10g01726 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 293 IPR029063 -
Cca10g01726 342 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Cca10g01726 342 Pfam O-methyltransferase domain 137 298 IPR001077 GO:0008171
Cca10g01726 342 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 22 300 - -
Cca10g01726 342 Gene3D - 2 106 IPR036388 -
Cca10g01726 342 Gene3D Vaccinia Virus protein VP39 113 311 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01726 Cca-Chr10 31519126 31553188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01726 9 301 Monolignol Biosynthesis Gene Families AT5G54160 47.855 1.57e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01726 K13066 - gmx:100784030 353.984