Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01725 ATGGGTTCTAATTATGGAGAGAAAGACAATGCATGGATCTGTGCAATGAATAATTTGCTTGGATCAGTATATTCTGGGGTATTGAAAGCTTCCATTGAACTCAACTTGTTTGAGATCATAGCAAAGGCATCAGTAGTTGGTGTCTCAACATCTGATATTGCTACACAGCTTCCAACACAACACCCAGAATTGGCTGGCAGGCTTGACCGCATGTTATGTTTATTAGCGAGTAACTTTCTTCTTATTTGTTCCACGCGCACAAATTAA 267 0.397 MGSNYGEKDNAWICAMNNLLGSVYSGVLKASIELNLFEIIAKASVVGVSTSDIATQLPTQHPELAGRLDRMLCLLASNFLLICSTRTN 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01725 88 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Cca10g01725 88 SUPERFAMILY "Winged helix" DNA-binding domain 8 86 IPR036390 -
Cca10g01725 88 PANTHER O-METHYLTRANSFERASE 22 88 IPR016461 GO:0008168
Cca10g01725 88 Gene3D - 2 88 IPR036388 -
Cca10g01725 88 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 22 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01725 Cca-Chr10 31485478 31485744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01725 9 86 Monolignol Biosynthesis Gene Families AT5G54160 43.590 3.65e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01725 - - ccaj:109817812 168.318