Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01724 ATGGGTTCTAATTATGGAGAGAAAGACAATGCATGGATATGTGCAATGAATAATTGCCTTGGATCAGTATATTCTGGGGTATTGAAAGCTGCCGTTGAACTCAACTTGTTTGATATCATAGCAAAGGCATCAGTAGTTGGTGTCTCAGCATCTGATATTGCTACACAGCTTCCAACACAACACCCAGAATTGGCTGGCAGGCTTGACCGCATGTTATGTTTATTAGCGAGTAACTCTCTTCTTATTTGTTCCACTCGCACAAATCAACATGGTAACATTGAAAGGTTTTACCAGGTATCCCCTGCTGGTAAATACTTCGTCAAAGATGAAATTAACGGTTCTTTGGCTTTCCAACCAATTCTTCGCAACCACCTAGTAATCGTCGAGGCCTTGATTAATTTTAAGGAGGTACTTCTGGACTTTGACAAGGGATTATTTGAGAAAGTTCACGGTGTGCCTTTTTATGAATACATCCAGTCAGATCCGACTTTGAGTAATGTTTTTAATAAGGCAATGTCTAATTCAAGTTTAATCATGATGAACAAGATACTTGAAACATATGAAGGATTTGAAGAAATATCGTTGCTAGTTGATGTGGGCGGTGGCATTGGCCAAAATTTGAATATGATAATCTCCAAGTATCCTTCTATAAATGGTATTAACTTTGATCTACCCCATGCGATACGCAAAGCTCCAATTCATCCAGGGATAAAGCATGTAGAAGGAGATATGTTTAAAAGTGTTCCTAAAGGTGATGCTATATTATTGAAGGTTGTATTGCACAATTGGTCGGATGAAGAATGTATTAAAATTTTAAGTAATTGCTACGAAGCTTTGCCACAAAATGGGAAGGTAATCGTCGTGGACTGTATAGTTCCTGAAGAAATTCACTCCACTGATGTAGATAAAATTTTAACTGGCTTAGACAACATGATGCTTCTGAATGATGGAAGCGAAAGAACGGAGAAACAATTTGAGAATTTATGCAAACACTCGGGATTTTCTCATTTTCATGTAGCTACTCGTGTCTTATCTACTCTGTCAGTGATTGAATTTCGTAAGTAA 1065 0.3765 MGSNYGEKDNAWICAMNNCLGSVYSGVLKAAVELNLFDIIAKASVVGVSASDIATQLPTQHPELAGRLDRMLCLLASNSLLICSTRTNQHGNIERFYQVSPAGKYFVKDEINGSLAFQPILRNHLVIVEALINFKEVLLDFDKGLFEKVHGVPFYEYIQSDPTLSNVFNKAMSNSSLIMMNKILETYEGFEEISLLVDVGGGIGQNLNMIISKYPSINGINFDLPHAIRKAPIHPGIKHVEGDMFKSVPKGDAILLKVVLHNWSDEECIKILSNCYEALPQNGKVIVVDCIVPEEIHSTDVDKILTGLDNMMLLNDGSERTEKQFENLCKHSGFSHFHVATRVLSTLSVIEFRK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01724 354 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Cca10g01724 354 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 16 354 - -
Cca10g01724 354 PANTHER O-METHYLTRANSFERASE 16 354 IPR016461 GO:0008168
Cca10g01724 354 PIRSF O-mtase 3 354 IPR016461 GO:0008168
Cca10g01724 354 Gene3D - 2 106 IPR036388 -
Cca10g01724 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 16 354 IPR016461 GO:0008168
Cca10g01724 354 Gene3D Vaccinia Virus protein VP39 109 354 IPR029063 -
Cca10g01724 354 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Cca10g01724 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 352 IPR029063 -
Cca10g01724 354 Pfam O-methyltransferase domain 144 335 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01724 Cca-Chr10 31477807 31479364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01724 9 354 Monolignol Biosynthesis Gene Families AT5G54160 47.564 8.54e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01724 - - gmx:100784030 439.884