Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01717 ATGAATGGGGAGGATAGGGGTAAATACCTTGCCCGTATTCTTAACGCTTGTGCCAAGTTTATTGAATCAGGCAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCACATCGCCTCCCCTTATGGTGATGCAATGCAGAGAGTAGCCACCTATATTAGTGAAGGTCTAGCTTGCCAAGTCCTGAAAAATTTGCATGGAGTACCTAAAGCTATCAATTTGTCGAAAACAATGTCAACTTCAGAAGAACAATTTGTTAAAAGGTCATTCTTTAATCTGTATCCATTTTTAAAGGTTTCATATGAGATCACAAGTCATGCCATTGCTGAAGCTATGGAAGGGGAAAAACTGATCCATATCATTGATCTCAGTGCATCTGATGGTCATCAGTGGACTTACCTTATGCAGAGATTAAAAGAAAGCCAAAAAAAAACCCCGTCTCTGAAAATCACAGGCATACATGAGAAGAAGGAAATCTTAGACCAAGTGGACACTCAGTTGCGAGTAGAAGCTGAAAACTTGAAATTCCATATCCAATTCAATGCTATTGTAAGCACTTTGGAAAATCTTGACCTTCGAGAATTGCCTATAATGAAAGGAGAGCCTCTTGCAATCAGTTCAGTGCTTCAGCTGCACACTCTTCTTGCTGCTGATGTTACAACGGTTGGCAGCACCAGCTCGCCAGCTGAATCAATGCATCAAAGGACATTTGCTGAGATTCTTGGGAAACAAAAGACCAACCCCAGTTCTAATTCATCATTGTTACAACTTCCTCTATATGCTTCTTCAACCAAGATATTGCACTTTCTAAATGACCTGTGGAAACTCCAACCTAGAGTGATGGTGATTACTGAACAAGAATCTAATGTTAATGGTTCTTCTCTAACAGAAAGGGTAGACAAAGCATTGGATTTTTATGGTGCATTGTTCAATTGCTTGGAATCAACTGTTTCAACAACACCGATAGAGAGAATCATAATGGAGAGGACTCTATTAGGGGAAGAAATAAAGAACATCGTTGCATGTGATGGAGATGAGAGAAAGGAGAGGCATGAAAAACTTGAGACTTGGATCCCAAGGATAGAATTGGCTGGGTTTTGCAAGGGACATATCAGTCATCATGGGAAGATGCAAGCAACAAAACAGTTGCATGGTTATGGAAAGGGATATAAGGTTTTCCAGGAGAATAATTGTTTGTTTGTCTGCTGGAATGATAAACCACTCTTTTCTGTTTCTACCTGGACGGTTTAG 1254 0.4011 MNGEDRGKYLARILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYISEGLACQVLKNLHGVPKAINLSKTMSTSEEQFVKRSFFNLYPFLKVSYEITSHAIAEAMEGEKLIHIIDLSASDGHQWTYLMQRLKESQKKTPSLKITGIHEKKEILDQVDTQLRVEAENLKFHIQFNAIVSTLENLDLRELPIMKGEPLAISSVLQLHTLLAADVTTVGSTSSPAESMHQRTFAEILGKQKTNPSSNSSLLQLPLYASSTKILHFLNDLWKLQPRVMVITEQESNVNGSSLTERVDKALDFYGALFNCLESTVSTTPIERIIMERTLLGEEIKNIVACDGDERKERHEKLETWIPRIELAGFCKGHISHHGKMQATKQLHGYGKGYKVFQENNCLFVCWNDKPLFSVSTWTV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01717 417 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 2 416 - -
Cca10g01717 417 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 416 IPR005202 -
Cca10g01717 417 ProSiteProfiles GRAS family profile. 1 416 IPR005202 -
Cca10g01717 417 Pfam GRAS domain family 11 416 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01717 Cca-Chr10 31167734 31170316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01717 4 415 GRAS Transcription Factor Family AT1G50420 44.573 6.09e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca10g01717 GRAS 6.6e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01717 - - vra:106778126 419.468