Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01716 ATGGACTCAGGGTCGCCAAACCAGTGGATGAGAGAGCTGAGATGGGACTCCCAGGGCTTAAATCCAATAAGCCTTCTTATTGACTGTGCTAAATGTGTTGCATCTGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCATATTTCATCTCCTGAAGGTAATGCAGTGCAAAGGATGGTCACTTATTTCAGTGAAGCACTTGGTTACAGAATAATCAAACATTTGCCAGGTGTATATAAGTCTATCCATCCCTCAAGAACATCACTGTCTTCAGAGGATATCCTTGTTCAGAAATACTTCTACGAATTGTGTCCCTTTTTGAAGTTCTCGTACCTGATCACGAACCAAGCCATTATTGAGGCCATGGAAGGAGAACAGGTGGTTCATATTATTGATCTCCATTGTTGTGAGCCAGCTCAATGGATAGATCTCCTACTAACTTTTAAAAACCGTCAGGGTGGTCCACCCCATCTGAAAATTACAGGCATTCATGAAAAGAAAGAAGTTTTAGACCAAATGAACTTTCATTTGATAACCGAAGCTGGGAATTTGGATTTTCCTTTTCAGTTTTATCCAGTTGTTAGCAAACTGGAAGATGTTGACTTTGAGAAGTTACCTGTGAAGACAGGAGATGCTATTGCAATAACTTCTGTTCTTCAGCTGCATTCTCTTCTTGCCACTGAAGAAGACATGGCTGGGAAGTTCTCACCAGCTGCGGCAGCATCGAGGAATCTGCAGAGAGCAGTGCATATGGGGCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATACATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCCTTAGGTGCCTCACCTAAGATGGGGATCTTTCTCAACGATATGCGAAAACTCAAACCGAAACTGGTTGTGATTACTGAACAAGAATCAAACCTGAATGGATCAAGTTTGTTGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGACTGCCTGGACTCTACCGTTATGAGAACATCAGTAGAGAGGCAAAAACTTGAGAGCATGCTTTTTGGAGAGCAGATAAAGAACATCATTGCTTGTGAGGGAGTTGATAGAAAGGAGAGGCACGAGAAGCTCGAGAAATGGATTCAAAGGCTTGAGATGGCTGGTTTTGTTAAGGTACCCTTGAGCTACAATGGGAGGATAGAAGCAAAGAATCTTTTGCAGAGATATAGTAATAAATACAAATTTAGAGAAGAGAATGATTGTTTGTTTGTCTGCTGGAGTGATAGACCATTGTTTTCTGTATCAGCTTGGAGTTTTAGGAGATGA 1329 0.4146 MDSGSPNQWMRELRWDSQGLNPISLLIDCAKCVASGSIKNADIGLEYISHISSPEGNAVQRMVTYFSEALGYRIIKHLPGVYKSIHPSRTSLSSEDILVQKYFYELCPFLKFSYLITNQAIIEAMEGEQVVHIIDLHCCEPAQWIDLLLTFKNRQGGPPHLKITGIHEKKEVLDQMNFHLITEAGNLDFPFQFYPVVSKLEDVDFEKLPVKTGDAIAITSVLQLHSLLATEEDMAGKFSPAAAASRNLQRAVHMGQRTFAEWLERDMINAYILSPDSALSPLSLGASPKMGIFLNDMRKLKPKLVVITEQESNLNGSSLLERVDRALYFYSALFDCLDSTVMRTSVERQKLESMLFGEQIKNIIACEGVDRKERHEKLEKWIQRLEMAGFVKVPLSYNGRIEAKNLLQRYSNKYKFREENDCLFVCWSDRPLFSVSAWSFRR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01716 442 ProSiteProfiles GRAS family profile. 13 439 IPR005202 -
Cca10g01716 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 440 IPR005202 -
Cca10g01716 442 Pfam GRAS domain family 23 438 IPR005202 -
Cca10g01716 442 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01716 Cca-Chr10 31161945 31164543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01716 1 442 GRAS Transcription Factor Family AT1G50420 50.331 2.51e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca10g01716 GRAS 1.5e-118 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01716 - - gmx:106798410 805.053