Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01706 ATGGCTAAGAAGGGCTGGTTTATCATGTTTAAGAAGCTCTTTCTATGGGACACATATTCCTCACAAGAGAAGAAGGAGAAAAGAAGGAGTTGGATATTTGGAAGGGTAAAGACCAAGAAGAGATTGCCTTCAATTACAGCTCCACCACCATCAAAAGAAACAAGACTAAGTGAAGCTGAGGAAGAACAAAGCAAGCATGCTTTATCAGTGgccattgcttcagctgctgctgctgaagctgctattactgctgctcaggttgctgttgaggttgttAGGCTCCAATCTACTCATCAACAACTTAGAGAAAAACAAGAACAACTTCAGCCTGTTAAAACAAGCCATGATGTTCCCCATTCCACATACCAATGCCAGAGGCAGATTGAAGAGTCTTCGGCCATCAAAATTCAAACAGCATTTAGAAGTTACCTAGCAAGGAAAGCTTTGAGGGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGCGGTAGAGCTGTGAGACGCCAAGCTATGAGTACTCTGAAGTGCTTGCAGTCCATTGTGAGTATCCAATCACAGGTCTTTGCAAGGAGACTCCAAATGGTTGAAGAAAGATGGGATTGTAGTGAACATGAAGAGGTGCAAGGCTCTAGAGACAAGATAATAAGGATGGACTCAAACAGTGAAAGAAGATGGGATGACAGCATTTTGTTGAAGGAAGAGGTAGATGCCTCTTGCATAAGCAAGAAAGAAGCACTTGTTAAGAGAGAGAAAGTAAAAGAATACTCATTTAACCACAGGAGATCAGCTGAATCAGAAAGAAATAAAATAAATGGAAGATGGAGGTACTGGATGGAGCAGTGGGTAGACACCCAACTTTCCAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCACATTATTCTAGAGCTAGGGGGGAGGAATGTGGAAGGAGACAACTAAATCTTAGAAATATTCAGAAACAAAATAAGGTTGAAGGATTAGATTCTCCAACAGTTACTTCAAGGAACTCTTTGCCCCACAGAAGCCAAACTTCAGAGGCAGAAGATCACTCATTTCCAAGCTCTCCGGCAATTCCTACATACATGGCTGCAACAAAATCAACACAAGCAAAAGCAAGATCAAGTAGCTCCCCAAGAGCAAGGACAGGAATGAATTTTGACATGAACTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCAGTTGTTACTTCTATTAATAGTGAAGTGCTTGGTAATGGTAGGATGGGAAGGCTAAGTAGTAATCAGCAAAGATCTCCAAGCTTAAAGGGCCATTCAAGACCTCTAAAATTAGTTCAGACATTGAGGGATCTCAGCATTAATTCAGATTGCTCAGTGCCAATTTCTGATCAACAAAGTTCCTTTAAGTGA 1404 0.3875 MAKKGWFIMFKKLFLWDTYSSQEKKEKRRSWIFGRVKTKKRLPSITAPPPSKETRLSEAEEEQSKHALSVAIASAAAAEAAITAAQVAVEVVRLQSTHQQLREKQEQLQPVKTSHDVPHSTYQCQRQIEESSAIKIQTAFRSYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVFARRLQMVEERWDCSEHEEVQGSRDKIIRMDSNSERRWDDSILLKEEVDASCISKKEALVKREKVKEYSFNHRRSAESERNKINGRWRYWMEQWVDTQLSKSKELEDLDSVFSSHYSRARGEECGRRQLNLRNIQKQNKVEGLDSPTVTSRNSLPHRSQTSEAEDHSFPSSPAIPTYMAATKSTQAKARSSSSPRARTGMNFDMNSDSYSPCKKKLSVVTSINSEVLGNGRMGRLSSNQQRSPSLKGHSRPLKLVQTLRDLSINSDCSVPISDQQSSFK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01706 467 PANTHER IQ-DOMAIN 11 1 453 - -
Cca10g01706 467 MobiDBLite consensus disorder prediction 416 434 - -
Cca10g01706 467 MobiDBLite consensus disorder prediction 416 441 - -
Cca10g01706 467 SMART iq_5 128 150 IPR000048 GO:0005515
Cca10g01706 467 MobiDBLite consensus disorder prediction 316 394 - -
Cca10g01706 467 Gene3D - 127 180 - -
Cca10g01706 467 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Cca10g01706 467 Pfam IQ calmodulin-binding motif 131 150 IPR000048 GO:0005515
Cca10g01706 467 MobiDBLite consensus disorder prediction 318 345 - -
Cca10g01706 467 PANTHER IQ-DOMAIN 5-RELATED 1 453 - -
Cca10g01706 467 MobiDBLite consensus disorder prediction 362 394 - -
Cca10g01706 467 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Cca10g01706 467 Pfam Protein of unknown function (DUF4005) 348 434 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01706 Cca-Chr10 30926462 30930089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01706 3 467 IQD Protein Family AT5G13460 44.444 4.48e-108 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01706 - - gmx:100794802 722.235