Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01692 ATGGGTCGAGGGAAGATTGAGATCAAAAGAATCGACAATGCCAGCAGCAGACAAGTCACGTTCTCCAAGAGAAGAACCGGCCTGTTCAAGAAAGCTCAAGAACTTTCCATTTTATGTGACGCCGAGGTTGCTGTCATTGTTTTCTCCAACACCGGCAAGCTCTTCGAGTTTTCCAATTCCGGAATGAAGCGAACACTTTCAAGATACAACAAATCCCTTGGTTCTGCAGACGCTGCCGTAGCAGAAAGTAAGACACAGGGGAAGGCTAGAAAAGGGAGTGGTTTGGGCCTAGGGTACAATCTGGGCAAGATGGGAAATAAATGGATGAGAAGGACAATGTGGTTAAGGGATGAGTGGGGATAA 363 0.4683 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSNSGMKRTLSRYNKSLGSADAAVAESKTQGKARKGSGLGLGYNLGKMGNKWMRRTMWLRDEWG 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01692 120 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca10g01692 120 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca10g01692 120 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cca10g01692 120 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca10g01692 120 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 81 - -
Cca10g01692 120 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca10g01692 120 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Cca10g01692 120 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca10g01692 120 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca10g01692 120 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca10g01692 120 PANTHER MADS BOX PROTEIN 1 81 - -
Cca10g01692 120 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01692 Cca-Chr10 30309838 30312544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01692 1 79 MADS-box Gene Family AT5G13790 76.250 3.47e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca10g01692 SRF-TF 6.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01692 - - ccaj:109807971 166.392