Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01691 ATGGGGGAATCTCGCGCCCCTAAGCGCCCCAGAATCACTAGGGGGGATGATGATTATATGCCTGGAAATATCCTTGAGATCGAGCTTTGTAATTTCATGACATTTGATTACTTAAAATGCAAGCCTGGGCCTCGATTGAATCTTGTAATTGGGCCCAATGGTTCTGGTAAGAGTTCGCTTGTGTGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTACGAGTATTGGGGCATATGTGAAGCGGGGAGAAGAATCAGGCTACATTAAGATCACCTTGAGAGGGGACCATAAAGACGAACGCATTTCGGTTATGCGTAAAATTAATACTAATAACAAGTCTGAGTGGTTGTTCAATGGAAACGTGGTGCCTAAAAAAGATGTGGCTGAAACCATTCATAGGTTTAACATACAAGTCAATAATTTGACTCAATTTTTACCGCAAGACAGAGTCTGTGAGTTTGCGAAGTTAACTCCTGTTCAACTTCTGGAAGAGACCGAGAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGAGCACTAGTTGATAAAAGTCGTACATTGAAGCATATTGAGTTGTCTCTGGAGAAAAATGAAGGAACTTTAAGACAGTTGAGGGAACGAAATGCTGAATTAGAGACTGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTACCAAGGCTGAATCAATGAAAAAGAAACTGCCTTGGCTGAGGTATGATATGAAGCAGGCAGAATACCGGGAAGCTAAGGAGCGTGAGAATGATGCCGCAAAGGCATTGGAAGAAGCTGCGAAGTTATTAAATGAACTTAAAGAACCCATTATGAAACAAAAGGAAGAGAAGGCTGCATTAGATGCAAAATGCAAAAAGGTTAGCAGCCATATAAATGATAATGCCAAGAAGCGAATGGAACTTATGGAGGAGGAGAACAAATTGGATGTGGAATTACGGGGTAAGTACACAGAAATGGAAGAGTTGAGGAGGCAGGAAGAAACTCAACAACAAAAACTTGTAAAAGCTAGGGAGGAACTTGCTATTGCTGAACTTGAACTTGAGGAGATGGTCCCTTATGTAGCTCCTAAGGATGAGCTTCAAAGACTAAAAGCTGAAATTGTGGAATTGGATCATTCTGCTACTCAAGTGAGGCTGAGCAAGTCACAAGCAGAAAGTGAAATAAATCATAAGAAGTCATCAATGGCACAGATTAAAGACAGGTTGAATGAAATGAATAATAAAAGTGCAAACAGTTTGATTGTATTGCAACGATCAGGTGCTGAAAAAATTTTTCAAGCTCATAAATGGGTCCAAGAACATCGGCATGAATTCAATAAGGAGGTTTATGGTCCTGTTTTAGTAGAGGTGAATGTCTCGAATAAGGTTCATGCTGCATATCTAGAGGGTCAAGTGGCTCATTACACTTGGAAGTCCTTCATAACACAAGATTCTGGTGATCGAGATCTTTTGGTGAAACACCTGCAGTTCTTTGATATACCAGTTTTAAATTATACTGGTGATGGTGACCACCAAAGAGAGCCTTTTGAAATTTCTGAAGCTAAGCGTGCTCTTGGTATCTACTCTCGGATGGATCAAATTTTTGATGCTCCTATTGCAGTGAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATAATTCGTATATTGGATCCAAAGAAACCGATCAGAAGGCTGATGAGGTCCCAAAATTGGGAATTTTTGATTTATGGACACCTGAAAATCACTATCATTGGTCCAAGTCTAGATATGGAAACCATGTATCAGCGGTAGTTCAACAAGTGGAACGCCCACATCTTCTGTTGAATAATGATTCGGATGTTGGAGAAATTGAGAAGCTGAGTTCCCGGCAAAGGGAGCTTGAAGAAGTCATCACTCATTTGGAGGAAAGTGTTAAAAGGTTTCAAGATGAGGAAAGAAGCTTATTAAATGAAGCTGCTAATCTTCGTAAACAGTGGGAGCGCATTAGTATTGAAGTACAGAATGAGCATAAAAAACGTAAAGCCATTATTAGCCGTATTGATCAAAAGAAAAAGTTATTAAAATTGATGGAGGAAAGGGATGATACAGATACCGAGATATTAAAGCTTGTTGATCAGGCTAACAAATGTAACATTCAGCGATTCCATAATGCAATGAAAATTAAGGATCTTCTTGTTAAAGCTGTGAGTTACAGACGGATTTTTATTGAACAACGTATGTCTTTTGTTGAATTTGATGCAAAGATTGGAGAAATGGAGACCAATCTAAAGCAGCATGAGAATTTTGCCCTCCAAGCATCATTGCACTTAGATAACTGTAAGAAAGAATCCGAGAATTGTAGAGAAAAGCTTACAGATTCATTGAAGTATGCTAAATCAATTGCTCGGCTTACACCTGAGCTAAAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTGGAAGCAGCTATTCAAGATACCATTTCTCAAGCCAATTCAATCCTCTTTGTCAATCATAACATATTGGAGCAATACGAAGAACGTCAACGACAGGTGCTCCTTCTAATTTCTATCATTGTATTTTGTTTGGGTTATTTTGTTGTGCCATGCATATTTACATTTACTTCACAGATAGAAGATCTTGCAGCAAAACTGGAAGCAGACAAGAAGGAATCAACACGGTGTTTGGCTGATTTAAATAACATCAAGGGAAAATGGCTTCCAACATTAAGAAACCTTGTTGCAAAGATAAATGAAACTTTCAGTTCTAATTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCACTTGATGAGCATGATATGGACTTTGATCAATTTGGAATACTTATAAAAGTCAAATTCAGGGAAAATGGACAGCTTCAAGTTCTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTTTCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGTTGGCTACTGTTTGAACAAATTTTTTTCAGATTGACACAAACTCTCAAAAGACTGATCCTGACTGTATTTTTATTAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTAAGAGCGGCAAGCAAGCCAAATACACCCCAGTGTTTCTTGCTTACACCGAAATTGTTGCCAGATCTACAATATAGTGAAGCATGTAGTATATTGAATGTGATGAATGGCCCTTGGATTGAGCAACCCTCGAAGGTTTGGACTACTGGTGATCGATGGAGTATCATCACGGGACTTGTTGGAGACACCCATTGTTAA 3318 0.3951 MGESRAPKRPRITRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKDERISVMRKINTNNKSEWLFNGNVVPKKDVAETIHRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALVDKSRTLKHIELSLEKNEGTLRQLRERNAELETDVERVRQRDELLTKAESMKKKLPWLRYDMKQAEYREAKERENDAAKALEEAAKLLNELKEPIMKQKEEKAALDAKCKKVSSHINDNAKKRMELMEEENKLDVELRGKYTEMEELRRQEETQQQKLVKAREELAIAELELEEMVPYVAPKDELQRLKAEIVELDHSATQVRLSKSQAESEINHKKSSMAQIKDRLNEMNNKSANSLIVLQRSGAEKIFQAHKWVQEHRHEFNKEVYGPVLVEVNVSNKVHAAYLEGQVAHYTWKSFITQDSGDRDLLVKHLQFFDIPVLNYTGDGDHQREPFEISEAKRALGIYSRMDQIFDAPIAVKEVLISQFNLDNSYIGSKETDQKADEVPKLGIFDLWTPENHYHWSKSRYGNHVSAVVQQVERPHLLLNNDSDVGEIEKLSSRQRELEEVITHLEESVKRFQDEERSLLNEAANLRKQWERISIEVQNEHKKRKAIISRIDQKKKLLKLMEERDDTDTEILKLVDQANKCNIQRFHNAMKIKDLLVKAVSYRRIFIEQRMSFVEFDAKIGEMETNLKQHENFALQASLHLDNCKKESENCREKLTDSLKYAKSIARLTPELKKEFLEMPTTIEELEAAIQDTISQANSILFVNHNILEQYEERQRQVLLLISIIVFCLGYFVVPCIFTFTSQIEDLAAKLEADKKESTRCLADLNNIKGKWLPTLRNLVAKINETFSSNFQEMAVAGEVSLDEHDMDFDQFGILIKVKFRENGQLQVLSAHHQSGGERSVSTIVFLVSLQDLTNCPFRVVDEINQGWLLFEQIFFRLTQTLKRLILTVFLLGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSIITGLVGDTHC 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01691 1105 Coils Coil 622 663 - -
Cca10g01691 1105 CDD ABC_SMC5_euk 952 1080 - -
Cca10g01691 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 1001 IPR027417 -
Cca10g01691 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 288 IPR027417 -
Cca10g01691 1105 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1027 1101 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cca10g01691 1105 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1001 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cca10g01691 1105 Coils Coil 393 420 - -
Cca10g01691 1105 Gene3D - 876 1002 IPR027417 -
Cca10g01691 1105 Coils Coil 194 228 - -
Cca10g01691 1105 Gene3D - 23 212 IPR027417 -
Cca10g01691 1105 Pfam RecF/RecN/SMC N terminal domain 25 1000 IPR003395 -
Cca10g01691 1105 Coils Coil 251 288 - -
Cca10g01691 1105 Coils Coil 331 358 - -
Cca10g01691 1105 CDD ABC_SMC5_euk 22 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01691 Cca-Chr10 30267711 30306669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01691 1 1094 Structural Maintenance of Chromosomes family AT5G15920 58.684 0.0 1261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01691 K22803 - gmx:100778678 1783.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01691 10 30267711 30306669 Cca10g01691 10 30267711 30306669 ECH