Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01674 ATGCTATCTTCAAATGTTGTTCCCTCATCCTCCCCTGTCACTTTCACCAAACCCAATCACCATTTCTCCTTTAATGCGTATCCCAATCTCAGACCAAATCTTCTCACAAGGTTTCAGGCCAATCACAAAGCCACTCATGAATCCCGTCTCAGAAGTTCCAAACTTTCTCTCAAGCCCACTTCTCAGATCCAACATTCAATCTCAAAGTTAGGATCTTTTAACAGATTCCTCCTACACCCTTTTGAGCTCTCATCAAAACCCAGAAACCAAATCGTTAAAGCTGCATCTGAAGCCAACCCTGAAGGAGAAAATGTAGCTCCTCCCAAATCTAAAAGTCTCAAACTTGGTCTGGTTTTTGGGCTTTGGTACTTCCAAAACATTGTGTTCAACATTTACAACAAGAAAGTGTTGAACATTTTCCCTTACCCTTGGCTTCTTGCCTCTTTCCAGCTCTTTGTGGGGTCCATTTGGATGGTGGTGCTTTGGTCCCTAAAGCTCCAACCTTGTCCAAAAATCTCAAAACCCTTTATCATTGCCCTCCTTGGACCTGCTTTGTTCCACACAATAGGCCACATATCAGCCTGTGTTTCATTCTCCAAGGTACCCCATACAGGGTTGTGGGGTGCCCTTATTAGCAATGTTGGTTTTGTGTTGAGGAACATCTACTCCAAGAGAAGTTTGCAGAATTTCAAGGAAGTTGATGGCTTGAACTTGTATGGATGGATTACTATACTCTCATTGCTCTACCTGTTTCCTGTGGCTATTTTCGTAGAAGGGTCTCAGTGGATCCCAGGGTATTACAAGGCAATTGAAACTATAGGGAAAACATCCACTTTTTATATTTGGGTGTTGCTGTCTGGTGTGTTCTACCATCTTTATAACCAATCATCTTACCAAGCACTAGATGAAATCAGCCCACTCACTTTCTCTGTGGGAAACACAATGAAAAGAGTGGTGGTGATTGTATCTTCAGTTTTGGTGTTCAGGAATCCGGTTCGACCACTTAATGGCCTTGGATCTGCCATTGCAATTCTTGGGACTTTCCTATATTCACAGGCAACATCCAAAAAGAAAGCAAAGAAAATTGAAGATGAAAAGAGTAGTTAG 1107 0.4219 MLSSNVVPSSSPVTFTKPNHHFSFNAYPNLRPNLLTRFQANHKATHESRLRSSKLSLKPTSQIQHSISKLGSFNRFLLHPFELSSKPRNQIVKAASEANPEGENVAPPKSKSLKLGLVFGLWYFQNIVFNIYNKKVLNIFPYPWLLASFQLFVGSIWMVVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVPHTGLWGALISNVGFVLRNIYSKRSLQNFKEVDGLNLYGWITILSLLYLFPVAIFVEGSQWIPGYYKAIETIGKTSTFYIWVLLSGVFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSSVLVFRNPVRPLNGLGSAIAILGTFLYSQATSKKKAKKIEDEKSS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01674 368 Pfam Triose-phosphate Transporter family 113 202 IPR004853 -
Cca10g01674 368 Pfam Triose-phosphate Transporter family 204 351 IPR004853 -
Cca10g01674 368 PANTHER SOLUTE CARRIER FAMILY 35 204 364 - -
Cca10g01674 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 353 - -
Cca10g01674 368 PANTHER XYLULOSE 5-PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC 37 201 - -
Cca10g01674 368 PANTHER XYLULOSE 5-PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC 204 364 - -
Cca10g01674 368 PANTHER SOLUTE CARRIER FAMILY 35 37 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01674 Cca-Chr10 29785308 29786570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01674 23 366 Antiporters AT5G17630 57.831 5.47e-148 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01674 K15283 - gmx:100779531 578.17