Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01670 ATGGAAGCCGCAGTGGTCGACCCTGGTTCCAGCCTCCTCAAAGCCGGTTTTGCGATTCCCGATCAATCTCCCGCCATGATAATTCCCACCCAGATGAAGCGAATGCTCGATGATGGGTTGGTGACCGATAACCCGGCCGTCGATGAGGTTGCCGTCGATCCGGTGTGCCGGGGTTATGTCAGAGATTGGGATGCCATGGAGGATTTGCTGCATTATGTGTTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGGCAAATACTTTTCACGGATCCACTTTGTACTCCAAAGGCTAACAAGGAACAGTTGGTGCAACTGATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCTGAGCAAGCAGTCTTGTCACTATATGCTGTAGGACGTATCTCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCACCAGTGATTGAGGGTGCTGTTAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTGTTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAATCCAATCCGCTAGTTAATATCAACGTCTATGATGTTGAGAAAATAAAACAACTATACTCATGTTGTGCTGAAGATGAATTAGCTTATCAGAAGACTCGAGATTCTTGCCCTATGGAGACACATACTCTTCCAGATGGGCAGGTCATAACAATTGGAAGAGAAAGATATACAATTGGCGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGAGCAGCTTGTTCGTACTATTTCAACTGTGTCATCTGATAATCATCGGCAACTTCTTGAAAATACTGTGGTTTGTGGTGGCGCTTCTTCTATGACTGGCTTTGAAGAGAGGTTTCAAAAGGAATCTAGCCTAAGTTCATCTGCTATTCGACCTACCCTAGTAAAGCCTCCGGAATATATGCCAGAAAATTTAACAATGTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATTATGTGAAATATCAGCTTGCTTATTTTTGTAATGAGCAAGCCTACAAAAGATCGAGTTTGGTCCTCGGTGACTTCTACTTGCACAGATTTTCTGCACCTCTTTTATGA 1134 0.4339 MEAAVVDPGSSLLKAGFAIPDQSPAMIIPTQMKRMLDDGLVTDNPAVDEVAVDPVCRGYVRDWDAMEDLLHYVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGVDLTNFLAQELGKSNPLVNINVYDVEKIKQLYSCCAEDELAYQKTRDSCPMETHTLPDGQVITIGRERYTIGEALFQPCLLGLEAHGIVEQLVRTISTVSSDNHRQLLENTVVCGGASSMTGFEERFQKESSLSSSAIRPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHYVKYQLAYFCNEQAYKRSSLVLGDFYLHRFSAPLL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01670 377 Gene3D - 5 339 - -
Cca10g01670 377 PANTHER BNACNNG31150D PROTEIN 1 346 - -
Cca10g01670 377 Gene3D - 123 324 - -
Cca10g01670 377 Gene3D Actin; Chain A, domain 4 165 252 - -
Cca10g01670 377 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Cca10g01670 377 Pfam Actin 2 335 IPR004000 -
Cca10g01670 377 PRINTS Actin signature 45 67 IPR004000 -
Cca10g01670 377 PRINTS Actin signature 217 233 IPR004000 -
Cca10g01670 377 PRINTS Actin signature 100 113 IPR004000 -
Cca10g01670 377 PRINTS Actin signature 125 144 IPR004000 -
Cca10g01670 377 SUPERFAMILY Actin-like ATPase domain 131 337 IPR043129 -
Cca10g01670 377 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
Cca10g01670 377 SMART actin_3 1 357 IPR004000 -
Cca10g01670 377 PANTHER ACTIN 1 346 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01670 Cca-Chr10 29564087 29591279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01670 1 335 Cytoskeleton Gene Families AT3G18780 34.181 1.24e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01670 K16615 - gmx:100794153 655.21